RNA id: TU272429


Basic Information

Item Value
RNA id TU272429
length 391
lncRNA type read_through
GC content 0.35
exon number 4
gene id G240099
representative False

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5525472 ~ 5544153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGGGCTGAACAATGTATTCTTTATATTTGATAATGTATATCAAAGCAACATCCATAAGATGGTGATTTTTTTTTTTCTGTTGTTTTTATTCACTTTGACACATATAAGAATTATTGTTTTATGTTTAATATGGATTATTCTTGGCGTGCTCCATGATGGCTATCAGGGCCAGCCAGGTCTCCTCAGCAGTGGGGACGATCTGATTGGCTGGCAAGAGGAAACCATAGCGACCAGTGTCTCTCAGCTCAAAGGTGTAGGAGTACTTGATGCCCTGATCATAAGTCCAGTCAATAGTGCCTCCACTGGCTTGGTCTGAGAACAAAACAGAGAGATTGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272565 lncRNA upstream 10716 5476054 ~ 5514756 (+) True G240207
TU272548 lncRNA upstream 58174 5467085 ~ 5467298 (+) True G240202
TU272547 lncRNA upstream 60017 5465202 ~ 5465455 (+) True G240201
TU272544 lncRNA upstream 113731 5411507 ~ 5411741 (+) True G240199
TU272533 lncRNA upstream 163364 5361861 ~ 5362108 (+) True G240188
TU272612 lncRNA downstream 4434 5548246 ~ 5548471 (+) True G240248
TU272613 lncRNA downstream 6020 5549832 ~ 5550183 (+) True G240249
TU272614 lncRNA downstream 6563 5550375 ~ 5550724 (+) True G240250
TU272615 lncRNA downstream 7357 5551169 ~ 5552748 (+) True G240251
TU272616 lncRNA downstream 11834 5555646 ~ 5556676 (+) True G240252
CI01000055_05517350_05524400.mRNA mRNA upstream 852 5517350 ~ 5524620 (+) True CI01000055_05517350_05524400
CI01000055_05263543_05300250.mRNA mRNA upstream 224823 5263247 ~ 5300649 (+) True CI01000055_05263543_05300250
CI01000055_05216403_05221104.mRNA mRNA upstream 304302 5216200 ~ 5221170 (+) True CI01000055_05216403_05221104
CI01000055_05212820_05215358.mRNA mRNA upstream 309329 5211471 ~ 5216143 (+) True CI01000055_05212820_05215358
CI01000055_05183333_05195895.mRNA mRNA upstream 328902 5183333 ~ 5196570 (+) True CI01000055_05183333_05195895
CI01000055_05565166_05572215.mRNA mRNA downstream 21354 5565166 ~ 5572457 (+) True CI01000055_05565166_05572215
CI01000055_05608414_05611862.mRNA mRNA downstream 63694 5607506 ~ 5613474 (+) False CI01000055_05608414_05611862
CI01000055_05614889_05616453.mRNA mRNA downstream 70253 5614065 ~ 5617461 (+) False CI01000055_05614889_05616453
CI01000055_05630944_05688603.mRNA mRNA downstream 87132 5630944 ~ 5688603 (+) True CI01000055_05630944_05688603
CI01000055_05693578_05697926.mRNA mRNA downstream 149702 5693514 ~ 5698294 (+) True CI01000055_05693578_05697926
TU272472 other upstream 358825 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272088 other upstream 1252757 4264027 ~ 4264066 (+) True G239802
TU272029 other upstream 1270380 4254210 ~ 4255092 (+) True G239755
TU272036 other upstream 1312070 4162250 ~ 4213402 (+) True G239761
TU271351 other upstream 2981354 2541201 ~ 2541235 (+) True G239173
TU272585 other downstream 70566 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272586 other downstream 70820 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272705 other downstream 543013 6086825 ~ 6086887 (+) True G240319
TU272730 other downstream 620048 6163860 ~ 6164011 (+) True G240344
TU272693 other downstream 790512 6334892 ~ 6341165 (+) True G240308

Expression Profile