RNA id: TU272427


Basic Information

Item Value
RNA id TU272427
length 1691
lncRNA type read_through
GC content 0.38
exon number 3
gene id G240099
representative False

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5525472 ~ 5544153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAGACGCTTCATATTTTGTGTGAAGTACAATAAATGTTATAAAACTCATCGGTAAACAGGCTTGTACTAATATAGTGGATAAAAAGAAGAAGACAATATAAGTTATAACCATAATTAAACTAAACTATACCTGCTCGATCTCCATGCAGCATATATTCGCAGTTTCTGACATTATAGTGCGTACTGACTGACTCCTGACACCGGAGAATGAGCTCTTGAAGCTCCGCCCTCTTAGGCCAAGTGCAGCAGCTCATTTGCATTTAAAGGGCACTCACTAAAACGGTGCGTTTTTGCTCAACCCCAAAAAGTGGCAATTTTAACATGCTATAAAAAATGATCTGTGGGGTATTTTGAGCTAAAACTTCACATACATACTCTGGGGACATCAGAGACTTATTTTACTTGTAAAATGGGGCATAATAGGTCCCGTTTAAAATTTAATATTTGATACCAAGAATTTGATTCCTGCGAGTGATGATGTCATTGTTGATATCAAGAATTCACGTTTTTACTAGTGAAAATGTAATTCCCTAATATTTCTTAATGTTTGTTGTCGTCCCTGGCAAAGCTGTAAATAAAACGCTAAATTCTTCATGCATCTCAGTCATCGACTGTAGTGAAAATGACATCAAACTGTGAAGACATTAATGTTAACATTACTGTAGTGTTGTGGTGTTTGTCTTCTTGCTAAGCCTTAAGTTTTGTAAATTGTGATGGACTATTTTTGTTAGTGGAAGCTTCAGGAGAAAATACAGGTAAGATTATAAAACACTTTCAACTCAAATCAACATTTCATGTCCATAGCATTATTTATTTGTCAAGAAGCAATGTAATAAGATGGATAATCTATAATCTGACAGTCATTATTGCAAAATAAACCCCTTTTTTGCCATAATGACCGACTGACTGTACATTATCCCTTGTGCATTTTACACTTACTCACATACTTATGCACTTTGACTCATATTGTAGAATGTTTAATATGGATTATTCTTGGTGTGCTCCATGATGGTTATCAGGGCCAGCCAGGTCTCCTCAGCAGTGGGGAGGATCTGATCAGCAGGCAGGAGGAAACCATAGCGACCAGTGTCTCTCAGCTCAAAGGTGTAGGAGTACTTGATGCCCTGTTCATAAGTCCAGTCAACAGTGACTCCATCGGCTTGGTCTGAGAGCAAAGAAATTGTTAGCAATTAAATTAATAGTCATTATGATATTGACAAGTTAAGAGCTTTAGATTCACTGTAAATGTACTTACAGATGGTAGAAATGATGCTGCCATATGTATATGCAGTGTTATACAAAGACTTCAGTTCAGTGATGGCCTTTCTAGCGAGCTCATGCTGAAGGGACAATACAGATTTTATTTGAATAGATCTAATATGTTAAAATCATCAAAATCAGCATGTTTCTGTGACATACCAGTTCAGCCTGGTCTTTGGCAGCAGTCGCTGTGAATCCATATGGATACAAGAGCATCTGGGAATAGCTGTGGATGGACAAAAAGGCCTTGAGGTTGCCGTGAGATTTCACAAAGTCCACAATGGCCTTGACCTCTGCAGTTCAGTTTTGTCCTTGGCAGCAGTGCTTGTGTATCCATATGGATAAAGGAGCATCTGGGAATAGCTGTGGATGGACACAAAGGCCTTGAGGTTGCCGTGAGATTTCACAAAGTCCACAATGGCCTNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272565 lncRNA upstream 11673 5476054 ~ 5514756 (+) True G240207
TU272548 lncRNA upstream 59131 5467085 ~ 5467298 (+) True G240202
TU272547 lncRNA upstream 60974 5465202 ~ 5465455 (+) True G240201
TU272544 lncRNA upstream 114688 5411507 ~ 5411741 (+) True G240199
TU272533 lncRNA upstream 164321 5361861 ~ 5362108 (+) True G240188
TU272612 lncRNA downstream 4093 5548246 ~ 5548471 (+) True G240248
TU272613 lncRNA downstream 5679 5549832 ~ 5550183 (+) True G240249
TU272614 lncRNA downstream 6222 5550375 ~ 5550724 (+) True G240250
TU272615 lncRNA downstream 7016 5551169 ~ 5552748 (+) True G240251
TU272616 lncRNA downstream 11493 5555646 ~ 5556676 (+) True G240252
CI01000055_05517350_05524400.mRNA mRNA upstream 1809 5517350 ~ 5524620 (+) True CI01000055_05517350_05524400
CI01000055_05263543_05300250.mRNA mRNA upstream 225780 5263247 ~ 5300649 (+) True CI01000055_05263543_05300250
CI01000055_05216403_05221104.mRNA mRNA upstream 305259 5216200 ~ 5221170 (+) True CI01000055_05216403_05221104
CI01000055_05212820_05215358.mRNA mRNA upstream 310286 5211471 ~ 5216143 (+) True CI01000055_05212820_05215358
CI01000055_05183333_05195895.mRNA mRNA upstream 329859 5183333 ~ 5196570 (+) True CI01000055_05183333_05195895
CI01000055_05565166_05572215.mRNA mRNA downstream 21013 5565166 ~ 5572457 (+) True CI01000055_05565166_05572215
CI01000055_05608414_05611862.mRNA mRNA downstream 63353 5607506 ~ 5613474 (+) False CI01000055_05608414_05611862
CI01000055_05614889_05616453.mRNA mRNA downstream 69912 5614065 ~ 5617461 (+) False CI01000055_05614889_05616453
CI01000055_05630944_05688603.mRNA mRNA downstream 86791 5630944 ~ 5688603 (+) True CI01000055_05630944_05688603
CI01000055_05693578_05697926.mRNA mRNA downstream 149361 5693514 ~ 5698294 (+) True CI01000055_05693578_05697926
TU272472 other upstream 359782 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272088 other upstream 1253714 4264027 ~ 4264066 (+) True G239802
TU272029 other upstream 1271337 4254210 ~ 4255092 (+) True G239755
TU272036 other upstream 1313027 4162250 ~ 4213402 (+) True G239761
TU271351 other upstream 2982311 2541201 ~ 2541235 (+) True G239173
TU272585 other downstream 70225 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272586 other downstream 70479 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272705 other downstream 542672 6086825 ~ 6086887 (+) True G240319
TU272730 other downstream 619707 6163860 ~ 6164011 (+) True G240344
TU272693 other downstream 790171 6334892 ~ 6341165 (+) True G240308

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU248248 True 439 lncRNA 0.47 2 NC_056723.1 8789775 ~ 8790488 (+)