RNA id: CI01000057_01859686_01900493.mRNA



Basic Information


Item Value
RNA id CI01000057_01859686_01900493.mRNA
length 5197
RNA type mRNA
GC content 0.50
exon number 30
gene id CI01000057_01859686_01900493
representative True

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1859686 ~ 1901066 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GATCCGGCCGCAGATGGCAAAAGAAAAGATTGAGGGATGTCACATCTGCACCTCTGTTACTCCTGGGGAGCCCCAGGTGCTCTTGGGTAAAGACAAGGCCTTTACATATGATTTTGTGTTTGACTTGGACGCTCAGCAGCACCAGATCTACAGCGCCTGCGTTCACAAGCTCATTGAAGGCTGCTTCGAAGGATACAACGCAACTGTCTTTGCTTACGGTCAAATCTCAAAGACCCTTATGAATTCCTGTCTTCTTGTGCTGTGTGTCTATGTATGTAGTCGGACTGTGATGATTGCCTGCGTGAGCCCTTCTGACCGTGACTTCATGGAGACCCTGAACACTCTGAAGTACGCCAACCGCGCTCGCAACATCAAGAACAAAGTGATCATGAACCAGGATAAAACCAGTCAGCAGATCAGCGCCTTACGAGCAGAGATCGCACGCCTTCAGATGGAGTTAATGGAGTACAAAGCGGGAAAGCGAGTGGCCTGTGACGATGGATCCGAGGGGTTTAGCGATCTGTTTCAGGAGAACTCGATGCTCCAGAAAGAGAATGATACTCTGCGTATGCGGGTCAAAGCCATGCAGGAAACCATCGACCACCTCAACACTCGAGTCACCCAGCTGCTCACCAACGGAGTCAACCTGCTGCTCACCAAGACTGGTGAAACGAATGAGGAGATTGGCAATCTAATTCAGAACTACATTCGAGAAATTGAAGAGCTGAGGTCTAAGCTGCTGGAGAGTGAGGCCATGAACGAGTCTCTGAGGCGCAGTTTGTCTCGCCTCTCCGCGCGCTCTTCATACCCGGCCTCCCACCCGTCCACTCCAGCACACGCTCTAGGCTCCTCCCCCTCTGTTTCCATGGATGCAGAGATGACCGATGTGATTCGTCAGGCCAAATTAGATGTGGAGAGGCTAAAGAAGAAAGAGAGAAATCAGAGGAGGAAGAGTATGTCTCGACCGACTCAAACTAAGGACAGCAGGTTGGCACAGATACAAGTATCTCTCGGTAAATTGTCTGTCATAATGAATATGACTACAGGAACGTCCCGCTCTAATGTGGCTGTAATGGGAGAGAGGCCATGGGTAATTTGTGAACCCAACATTACAGAATTACTACTAGAAGTCTCAGCTGGCAAAGGTCCTGAGAAAGAAAAGGGTTTGAAGAAGAGAGCCAAACTTCATCCTCAAGAAAATGGAGAAAAGAGCGAGAATGGGCTGAGCAGAGAAAATGAAGAGAGACGAGAAAATGGAGATGGAGACTCTGATAATGAACCTGAAGAGGATGATCACGAGGAGAGCGGCTGTGATGAGGATGAGGAAGAGGAGACCAGGGAGGAGGAAGAGTTTGACAGCGACGAAAGCCTGGTGGATTCTGACTCTGACTCGGATGAGAAAGTGAACTTGCAGGCCGATCTTGCAGACCTGACGTGCGAGATCGAGATCAAGCAGAGGCTCATCGATGAGCTGGAGAACAGCCAGCGGCGGCTCCTCACGCTGAAGAGCCAGTATGAGGAGAAACTGATCCTGCTTCAGAACAAGATCAGAGACACACAGCTGGAGAGAGACCGCGTGCTGCACAACCTCATGTCCATGGAGAACTACACTGAAGAGAAAGCCAGTAAAATCAAATCGGACTACGAGAAGCGTCTGAAGGAGATGAACAGAGACCTGCTGAAGCTGCAGGCCGCTCAGAAGGAACACGCTCGCCTGCTGAAGAACCAGAGCCGCTACGAGAGAGAGCTCAAGAAACTGCAGTCTGAGGTGGCTGAGATGAAGAGAGCAAAGGTGGCGCTAATGAAGCAGATGAAGGAGGAGCAGCAAAGGAGGAGGGTGATCGAGGCGAAGAGGAACAGAGAAATCGCACAACTGAAGAAAGAGCAGCGACGACAAGAGTATCAGATCCGTTCTTTGGAGTCCCAGAAGCGTCAGCAGGAGATCGTGTTGCGGAGGAAGACGCAGGAAGTGACGGCTCTGAGGCGGCTGGCCAAACCAATGTCGGAGCGTGTGGCCGGACGCGTAGCCCGCAGACTCACCAGCGTGGACTCCGGAGCAGAGCTGACCACCAGTATCACAACACCCCCCTCTGTACTGGACTCTACACGCTCAGTTTCCAGCATCATACGGCAGTGGAATACCAAACTAAATGGATACCTGGGAGAGAACGAGACCCATGGGACTGGAGGAAGCCTGGCCAGTAGCAGAAAAAAGTTCCAGCGAAAGGGTACGAGCGCAAGTTTTTCAAAGACAGCCCGTCAGAAGTGGCAGTCTCTGGAGAGGAGGATCATGGATATTGTGATGCAGAGAATGACCATCACTAATGTAGAAGCTGATATGGATCGCCTCATTAAGAAACGTGAGGAGCTGTCCATGCAGCAGGAGGCGCTGTTGCGCAAGAGAGAGAAGTTACTGAACGAGGGCTTCAGAGAGGATGAGGAGGAGAGACTGCTTCAGGAGATGAATGAGGAGATCGAGGTTCTCAATGCCAACATTGACTACATCAGCGACAGTCTGTCAGACTGCCAGGCCACCATCGTACAGATCGAGGAGACCAAGGATGAGCTGGACTCAGTGGACACCTCGGTGGTCATCAGTTCCTGCTCGCTGGCTGAAGCTCGTTCTCTCCTGGACTACTTCCTCAAAGCCTCTATTGACAAGGGCTTGCAAGTTGCTCAGAAAGAGGCTCAGATTCGCCTGCTGGAGGGTCAGCTGCGGCAGACGGATGTGATTGGCTCTTCCCAAAATCACATGATCCTGGATGCTCTAAGGGAAAAGGCGGAGTGTATCCCTGAGCTACACGCTCTAATCCACAACGTCCAGCAAGAGAATGGCTATGCAAGCACAGATGAGGAGGTGTCTGAGTTCAGTCAGGCGTCAGAGGGCGGTTTCTCCCAAATGAAGTTGTCTGCGAGTCAAGATGACTTTAAGATGAAGGTTGAGCCTCGGCTATCTGCACAAATGAAAGCGGTGTCAGCTGAGTATTTGGGCCCTATTCTGGACCTCAGCTCCAAGAGCATCACTAAGTCGCTGGCCTCTCTATCAGAGATCCATGAGAACGGCCTGGTCCTCAAAGAGCCCTATTACAGAGAGCTGGTGTCTCGAACCATCAGCCTGCCTGTCCGAGGACACACTTTCCCAAGACAGTCCAGAGGGTCTGACACATCTCCCTTAACAAGGAGGCAGTCATATGACCGAGGCCAGCCATACAGGTCGGATGACAGCGACTCCTCTCTCTCGGAGGTGTTCAGTGACACTGTGATTTCTCTGCACCCCATTATCCTGACAGCACAATTGCATTTTTCTCATTTCTTTCGAGTTGTTCTCGTTATCCCATTAGAAGTTAATGGCTCTATGATGGAACATGGAGTGCTTGGAACAACTCAGCCCCAAATTTCCTTTGAGAGACAAATCTGTTTAAGGGGAGAATCGCAGACAGCTGGCTTAACTTGCTCACCAAATTACTTCCACCTGTTTACTCTAAGAAATGACTTCTCCACTTTCCAGAAGGGGGGTGTGATCACTCCCACAGGTGGGCTGAAGGGGGGCAGGACGGCCCCTCTACAGTGCGTGGCAATGGCCGAGGGACACACCAAACCTGTGCTCTGCCTGGATGCCACTGACGAGCTGCTTTTCACCGGGTCCAAAGATCGAACCTGCAAGATGTGGAACCTGGTGACCGGACAGGAAATAGTCACCCTGAGAGGACATCCTAACAACGTAGTTTCCGTCAAATACTGCAGCAACTCCAGCCTGGTCTTCACAGTTTCCACCTCGTATATCAAAGTATGGGACATTCGTGATTCTGCCAAGTGTGTCCGAACATTTACGTCATCGGGTCAGGTGGTCTCAGGTGATGCCTGTGCTGGTACAACCACCCGCACCATCACTACAGCCCAGGGCGAGTATCAGATCAACCAGATTGCCCTCAATCCCTCCGGATCGGTGCTCTATGCTGCTGCAGGCAACACTGTCCGCACATGGGACCTCAACAGAATGCAGGCCACTGGGAAGCTGACAGGACACATTGGGTCAGTCATGTGTCTTACAGTGGGTTATTCTGGAGGAGGCAAGGATCAGGTGATCACTGGATCCAAAGACCATTACGTGAAGATATTTGACATTGCGGAGGGAGCCCAGGGCAACATCGGACCGGCTCATAACTTCGAGCCCCCTCATTACGATGGGATTGAGTGTCTTGCTGTACACGGTGACATACTGTTCAGTGGTTCCCGCGACAACGGCATTAAGAAATGGGATCTGGGACAGCAGGAGCTGATTCAGCAAATCCCAAATGCGCACAAGGATTGGGTGTGTGCACTGGCGTTTGTTCCCGGGCGGCCCATGCTCCTCAGCGCCTGCAGGGCAGGCATGCTCAAGGTGTGGAACGTAGACAACTTCACGCCCATCGGAGAGATTAAGGGCCATGATAGCCCCATCAATGCCATCTGCACCAATTCCAAACAGATCTTTACTGCGTCCAGATGCGTATTACACATAAACGTGGCAAGAATCTTCCAGAACTTCAAGCTGCGATGTGACTGGCTGGCTTCTTCGCAGCTTCTGTACTCTGGTTTCTGTGAGTCTGCTTGGAAACAAAATGGTTATGATAACTGCTTCTGAGGATGAACTAGTTGCCAGATTTGACAAACTTTGCAAGATGACATTTGAATCTTTCAAAGAACTTTATTTTGAGCCATTGTGTATCTTCAAGATATCATCAAGCTCAACCGTTTGCCTATATTCAGAACGTGTGCAAACATGTCAACTGAAAATTAGAAAAATTGGTATAAATGTGAAGACAAGGGGAGCAAGTAGAGTTTTAAAGTCGGCATGAAACAGAAGTTGCGACAGTCTTTTGTGTCATATATCTGAGTGAAACGGCTTCTGGAACAAGAACAAATGTAGGGCGGGACTTGATTTTGTCCATGTGGAATTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGATTGACAGGTTGCCCCGCCCTTGTCATCAGAGAAGAGAAGAGAAGTTGCTGCAAGAGGGAGGGGAGGTTATTCTGAATCAAGATTACAATGCACATTAATTAAAAAAAAAAAAAAATGTGCACAGATAAATCATTTATCATAAATACTGCTATATTCCATTAAATATCAAGAATTGTCCATTTTAATGTCATGCTAGCTTTAAAGTCCCCCCTGAAAA

Function


GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10395 KIF4; kinesin family member 4

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU276648 lncRNA upstream 150210 1704632 ~ 1709476 (+) False G243740
TU276649 lncRNA upstream 151191 1704632 ~ 1708495 (+) True G243740
TU276632 lncRNA upstream 206695 1582950 ~ 1652991 (+) False G243733
TU276707 lncRNA downstream 204631 2105697 ~ 2111516 (+) True G243797
TU276747 lncRNA downstream 227424 2128490 ~ 2129226 (+) True G243837
TU276760 lncRNA downstream 297522 2200992 ~ 2207673 (+) True G243848
TU276762 lncRNA downstream 307869 2208935 ~ 2209242 (+) True G243850
TU276764 lncRNA downstream 326832 2231936 ~ 2234295 (+) True G243852
CI01000057_01780001_01798256.mRNA mRNA upstream 61039 1780001 ~ 1798647 (+) True CI01000057_01780001_01798256
CI01000057_01711126_01748095.mRNA mRNA upstream 111191 1711126 ~ 1748495 (+) True CI01000057_01711126_01748095
CI01000057_01697652_01698656.mRNA mRNA upstream 160669 1697652 ~ 1699017 (+) True CI01000057_01697652_01698656
CI01000057_01673559_01688208.mRNA mRNA upstream 170404 1671911 ~ 1689282 (+) True CI01000057_01673559_01688208
CI01000057_01662304_01670233.mRNA mRNA upstream 189106 1660369 ~ 1670580 (+) True CI01000057_01662304_01670233
CI01000057_01926510_01929865.mRNA mRNA downstream 25444 1926510 ~ 1930024 (+) True CI01000057_01926510_01929865
CI01000057_02043653_02103160.mRNA mRNA downstream 142437 2043503 ~ 2103654 (+) True CI01000057_02043653_02103160
CI01000057_02126499_02142817.mRNA mRNA downstream 225433 2126499 ~ 2143124 (+) True CI01000057_02126499_02142817
CI01000057_02168933_02179593.mRNA mRNA downstream 267867 2168933 ~ 2180026 (+) True CI01000057_02168933_02179593
CI01000057_02198818_02199189.mRNA mRNA downstream 297699 2198765 ~ 2199305 (+) False CI01000057_02198818_02199189
TU276421 other upstream 901315 956063 ~ 958371 (+) True G243558
TU276419 other upstream 904491 954843 ~ 955195 (+) True G243557
TU276323 other upstream 1439176 420156 ~ 420510 (+) True G243476
TU276844 other downstream 493532 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276911 other downstream 675387 2576453 ~ 2576852 (+) False G243975
TU276910 other downstream 675404 2576470 ~ 2576852 (+) True G243975
TU276930 other downstream 734171 2635237 ~ 2652560 (+) False G243991
TU278389 other downstream 1186030 3087096 ~ 3292562 (+) True G245231

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006230 False 3660 mRNA 0.55 23 NC_007122.7 2902592 ~ 2934138 (+)
bowfin (Amia calva) AMCG00013849 True 3691 mRNA 0.61 25 CM030125.1 45419913 ~ 45431617 (+)