RNA id: TU284001


Basic Information

Item Value
RNA id TU284001
length 216
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G250242
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3570209 ~ 3570424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGATATCAAAGGCAGCGAAGGATACATCTATGCTGCCTTCAAAAATTGATCGGATGAAGGCATCTCATGAGACAGGAAGTGAAGCTAACTTTGGATTCAGATGTGCCTTGATGCCTTCCTACCTTGGAATGTGTCCTCTGAAGGCAGCATTTTTCAGTTTTCGGATGCAGCCAATAAATTGATCGAGTGCATGAGCATTCTCTTCTTCGTGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283209 lncRNA downstream 61439 3493814 ~ 3508770 (-) True G249555
TU283210 lncRNA downstream 237654 3324766 ~ 3332555 (-) True G249555
TU283218 lncRNA downstream 339155 3230557 ~ 3231054 (-) True G249560
TU283231 lncRNA downstream 370354 3199639 ~ 3199855 (-) True G249573
TU283225 lncRNA downstream 375469 3194082 ~ 3194740 (-) True G249567
TU284009 lncRNA upstream 34849 3605273 ~ 3605484 (-) True G250250
TU284010 lncRNA upstream 37188 3607612 ~ 3607834 (-) True G250251
TU284016 lncRNA upstream 66389 3636813 ~ 3637097 (-) True G250257
TU283980 lncRNA upstream 68749 3639173 ~ 3639906 (-) True G250225
TU284019 lncRNA upstream 83257 3653681 ~ 3653990 (-) True G250259
CI01000058_03239666_03330001.mRNA mRNA downstream 240208 3239666 ~ 3330001 (-) False CI01000058_03239666_03330001
CI01000058_03154548_03160071.mRNA mRNA downstream 410138 3154539 ~ 3160071 (-) True CI01000058_03154548_03160071
CI01000058_03136045_03137264.mRNA mRNA downstream 432945 3135699 ~ 3137264 (-) True CI01000058_03136045_03137264
CI01000058_03128328_03131680.mRNA mRNA downstream 438347 3128275 ~ 3131862 (-) True CI01000058_03128328_03131680
CI01000058_03112748_03117231.mRNA mRNA downstream 452978 3112232 ~ 3117231 (-) True CI01000058_03112748_03117231
CI01000058_03668662_03671701.mRNA mRNA upstream 98122 3668546 ~ 3672185 (-) True CI01000058_03668662_03671701
CI01000058_03684461_03827727.mRNA mRNA upstream 114037 3684461 ~ 3827727 (-) False CI01000058_03684461_03827727
CI01000058_03904018_03906800.mRNA mRNA upstream 333473 3903897 ~ 3908108 (-) True CI01000058_03904018_03906800
CI01000058_03950901_03956376.mRNA mRNA upstream 380477 3950901 ~ 3956376 (-) True CI01000058_03950901_03956376
CI01000058_03977379_03991942.mRNA mRNA upstream 406440 3976864 ~ 3991942 (-) True CI01000058_03977379_03991942
TU282944 other downstream 709016 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU281026 other downstream 2915260 646443 ~ 654949 (-) True G247592
TU283989 other upstream 118219 3688643 ~ 3696711 (-) True G250230

Expression Profile