RNA id: TU287790


Basic Information

Item Value
RNA id TU287790
length 254
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G253568
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 4763608 ~ 4763861 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGTTAGCAACACAACAACAACAAAAGTTTAGGTTTGTTTGAGATGAGCAAATTCTGCGCAGAACCGATCACCGCGAGATGAATGCCGGTTAGAAATAGGCTTGTTTGAGATGAGCAAATTCTGTGCAGAATCGATCACCGGTGATAACCGCGAGATGCATGCCGGTTAGAAATGTGTCCGAGGGTGGGCCGCCTTGCTCTGATGTCATGCCGACGTGTGTCAAAAAAGTCTCGCGACAGCGAGGCGGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287759 lncRNA upstream 14051 4747333 ~ 4749557 (+) True G253537
TU287786 lncRNA upstream 34751 4728655 ~ 4728857 (+) True G253564
TU287784 lncRNA upstream 39222 4724034 ~ 4724386 (+) True G253562
TU287776 lncRNA upstream 68700 4694693 ~ 4694908 (+) True G253554
TU287770 lncRNA upstream 81451 4681675 ~ 4682157 (+) True G253548
TU287791 lncRNA downstream 3474 4767335 ~ 4767689 (+) True G253569
TU287742 lncRNA downstream 101901 4865762 ~ 4867891 (+) False G253523
TU287743 lncRNA downstream 101901 4865762 ~ 4867891 (+) True G253523
TU287807 lncRNA downstream 187837 4951698 ~ 4952570 (+) True G253585
TU287761 lncRNA downstream 192175 4956036 ~ 5007606 (+) True G253539
CI01000059_04738121_04755527.mRNA mRNA upstream 7571 4737897 ~ 4756037 (+) True CI01000059_04738121_04755527
CI01000059_04696095_04711041.mRNA mRNA upstream 51976 4696095 ~ 4711632 (+) True CI01000059_04696095_04711041
CI01000059_04633952_04678096.mRNA mRNA upstream 85337 4633952 ~ 4678271 (+) True CI01000059_04633952_04678096
CI01000059_04597371_04601178.mRNA mRNA upstream 162261 4597327 ~ 4601347 (+) True CI01000059_04597371_04601178
CI01000059_04558576_04590484.mRNA mRNA upstream 172887 4558576 ~ 4590721 (+) True CI01000059_04558576_04590484
CI01000059_04772561_04774001.mRNA mRNA downstream 8700 4772561 ~ 4774494 (+) True CI01000059_04772561_04774001
CI01000059_04775037_04778148.mRNA mRNA downstream 11176 4775037 ~ 4778226 (+) True CI01000059_04775037_04778148
CI01000059_04788367_04802962.mRNA mRNA downstream 24506 4788367 ~ 4802962 (+) True CI01000059_04788367_04802962
CI01000059_04804388_04804862.mRNA mRNA downstream 40527 4804388 ~ 4805013 (+) True CI01000059_04804388_04804862
CI01000059_04805360_04812055.mRNA mRNA downstream 41419 4805280 ~ 4812074 (+) True CI01000059_04805360_04812055
TU286863 other upstream 1560517 3202739 ~ 3203091 (+) True G252732
TU285978 other upstream 2628430 2131492 ~ 2131636 (+) True G251935
TU286110 other upstream 2691684 2069478 ~ 2069578 (+) True G252061
TU285191 other upstream 3102218 1627766 ~ 1661390 (+) True G251249
TU284915 other upstream 3696251 1064869 ~ 1067357 (+) True G251017
TU287891 other downstream 473898 5237759 ~ 5238233 (+) True G253654
TU289048 other downstream 1496182 6260043 ~ 6261633 (+) True G254692
TU289941 other downstream 2681081 7444942 ~ 7450195 (+) True G255434
TU290615 other downstream 3590358 8354219 ~ 8354873 (+) True G256046
TU290566 other downstream 3868090 8631951 ~ 8632104 (+) True G255998

Expression Profile