RNA id: TCONS_00016969


Basic Information

Item Value
RNA id TCONS_00016969
length 5243
RNA type mRNA
GC content 0.54
exon number 28
gene id XLOC_008476
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21882419 ~ 21943563 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCCTTCTCGCCTACTGGATCCATCAAAGGAATGAAGCCAAATGATGTGAAAAACAAGACTGTTCATGAATCATTTAGGATGGCAGGGAAAGGGCTTCCTGTATGCCTTCGAAAGTCTCTGAGCCCTGGACAGCAGACCAAGATGATGTGCCTCTGCTGGCCTTCCCTGCTTTACTGGTTCTTCACCTCCACACTGAACACGGTCATTGGATCAAATATAACTCTAAGACTTTCTGAAGGATCTTCCTGCAGACCAGGATTTTACTGCCTGGAAGGAGGTGAGGGTCCTATTCCCTGCCCCAGAGGAACATTTGGACCAAGTTCCTGGGCCACGACCATAAACAGCTGTATCAGCTGTCCACCACACCACTATGGGCCTAGAGAAGGCTTGAGCAATTGCCTGCCCTGTGGGCCTTGGTCACATCAGCCTCAGCCAGGACAGGACAGCTGTACATGTCTGCAAGAAGGTCAAGTCTTCCAGGCCAGTGATGGGCAGTGTGCCTGTATGTTGGGATATACACTGAAAGGAGAAGCTTGTGCGCTGAACGTCTACGAGATCTGCAAAGACGGAAGAGCACGTAACCAGCATGGAGACTGTCTAGACCACAAACAATGGAAGCAGTATTGCTCACAGCAGGTGTGTTCATCTCCTGACCTGTACGAGGGTTATGATGTCTCTCTGGGTCTGTGTATGTGCAGAGGTTTGCCCAGGTCTGAGCCGGACAGAGCTGAATGTGCAGGCTGGTGCCGGAGCCTCCTTACTCCGGTTCTACAACTTGTTTGCACTGGAAGCCTTTACTTGCTCTACACTGAGGCTAATCAACAGGTGAGCGTGTCAGAAAGCATGCTGGAGAGCGTCCTTAAACACTGGGACTCCCGAGGGAGCTTTGAATGCAGTGCGCAGATCAACTTCTCCAGGCCGGTGTACACAGTTCAAACAGGCGAGCGTCACACCTGCTACTTCCACAGAGACAGCTTGTACAACACTAATGCTGCGTTCGACTGGGGAGCCTTCAGATTACTTCATCATGATCAGCTACTGGACAGATCTGCCCACTCTCTGTTCTCCATCAGCCTCCATGAGCCCGGCGTTTACACCTTCAAACTCAGCAGCCAGAAGCACAGACACATGtaTGTTAGGGTGGTTCCTGCAGGTGGAGAGTGTTACGACACTGGGCCTTTCTTTCCTTCTGACACACACCATTTGACCCGCATGGGCATCGCTCTGAGGCGCCAGCTGCTGCTCCGTCCCGATTGGCTGACGATTGGTGGGCTTTTAGCAGGAGCTGTTCTTGTCCTCTGTCTGTGCGTCATCATATTGGCAAGTGATAATGGAGGTTTAACAAAAACCTTAGGCTTGACAAAGCTTGGCTCGTTGAAGTGGCTGAACATTGTGTGCTTACAGGTCCTGTTCAGGGAGTATGGCTGGCCTGAGAAAGTGCCAGCCCAGGCCAGGTACCGTCATCTTCAGCTCCGGTATAACATGGATGACTATTCGTCCAAGGGCTCCAGGGTGGTGGCGGTGAAAAAGGCACACCGAAATCTGCAGGTGGGGCTGACGGAGGATTCAGGGCAGAGAGCAGTGGCTCTGGTATCGAGTGAATTCTGGGACTATGAAGAGCAAGTGGATCTGGAAGCCTTCAGTTCCAGCACCTTCTATGAAATCCTGCTCAAGCACAGCGTGTCGGTCACCGTTCGCCTTGGACAGCTCAAAGGAGAGGTGAAGCAACTCTACCAGGGGCTGCAGGGGAAGCTGAAGGAGCTCCACCCTGGCTGGAGGATGTTTGGAGGGAAAGGCGAAGGTTTGGAGAGGCAAGTAGAGCAGGAGATGGTGCGGCGCAGAGCGATGGCCAATCAGATGATTCAGCTGCTGGACAGTCAGATGCAGATCCTGCTGGTGGAGATGAAGGCCAAGCAGGCCATGCAGAGGGGCTTCAGAGCGCGGATGAGGGAGAGCTTGAGGCTTCTCAGACTGGCGGCCGAGGGTCAGGCCTCGCTCTGGGACAAATACATCAAACAACATGTTGTGGAGCGAGTGTCTCTTCTGGCTGATGAGATGACTGAGATGGTATCAGTGGAGAGCCAGAGGGCAGGCGCCAGCTCTGTGCTCAAAGAGGGCACTGGAGCACAGCTATTATGCCCTGCTACTGGAGCCGTCCTCAGCAGGGAAGACGTCATCGCCCCTGATGGATCTGTTAGAACTTGCGACGCTGTTCATGTAGATCCCCTCACAGGCCTCATTCAACCCAACTCTAATGCTCATATGTTACTGGCTAGTGGTCACAGCATGCCCGTGCCCCCGGACTTCTTTCTGCACCCCCAGACTGGCAAACTACTGCCTGTGGCTGGAAACGTGGACTTTGATCCTGCTTCTTCCACCCTTGTCTTTACAGCCGATGCTGGTGTTGGTGAGATGGGAAAATGGGAATCACCCCTGCTGCCTTTCATCCCGTACCCTTCATCCCGTTACACTGAAATCCTGGCTGCTTCCAAACTACGGGGGCTTCGTTCAGGCCAGAGGCTGGTGCTTGGTGGACCCATGTGCGACTACGACACTGGCGTTTTGGTGCCTATTCTTGCAGTCACTATCCATCCTCAAACAGGACTGGTTTATCCTTTGGGTGGAGTGTACACATGTCCCATCTCACGTCTGCGGCAGCCCATTCAGATTGGCTCTCCAATGCTGGACCCGCGCACAGGAAACCTGGTGCTCATCACGGGAATCACTCTCGATCCTCATACTGGGGCTGTGCTTCCAGTCGGAGGGCTCCTCCTGGGCGAGTCCTTCATCGAGCCCTTGAGCGGCCGGATGGTGCGGGTTGGTGGAGGCAGCGTGCGAGGAGGGAAGGTGGTGCCTCATGCTGGGGGTTTCCAGGCTCTGCTGGACAGCCAGGCTCTGGGCATCTGCTTGCGGGTGGCGGAGCTCCTGCGTGGATGCGGCGAGGAGTGGAGCTCAGCAAATGCAGATCCTCAAGGTGACCTGGACAGACTTTCGGCAGCAGCTTCTGAGCTGGAGCAGGCCTGGAGGAGCAGCCAGCACTGTATGCTGCAGATGCTGAGTCGCCTGGAGGCTGTACAAGAACAGGCCAGGGCTGTGCTGGAGGACGGCGGGAGTGTGGGGGAGATCAAGCTTCCTGGCATTGAGCTCTCCTTGCCGGCTCTACCCGGGCTGGAGTATCCTGACCCCGGAGGCTCGGGTTTACGCGTGCCAGTTCTCGGCGCTCAGTTGGACTGGGTGTCAGGCTGCATGGTGCCCTTGGCAGGAACCATGGAGGATGCAGATGGCAAAGTTAACCCAGAGTACATTACAGGCCTGGTTCCCATACGGTTTGGAGTGCAGACGGTGGACCCGGTGACAGGGGTAATCGCTCCGGTTGTAGGGGCCAATCTGGATGTCTGGAAGCGCGTTGTAGTTCCTGTAACCACATCCCAGATTTTGATGCTAGGAGAAAACCCAGACAGTGTCACGGTGGAAACCCTCCAGAAGGAGAGCAACGAACGGAGCAATTACTGGCGCGAGCAGACTCTGAAGGAGGACGAGATGCTGGGGGATTTTGACAGAGCCGTTAAACACTATCTCTCCACATCCGTTCACGAGTCCGACTGTaTGGACTGGACAGACACGGACAGGCAGTTGAGGGAAACGGCTGCTGAGATTCAGGAAAGTGCTCAGTGTGAGGCCCAGAGAAAAGCTCTCCAGAAGTCAGATTTATCTCTGCTTCTACCAGCCCATGTGTTACACGCTCTCACAGGAGGTCAGTCCTTGCGCTCAGACTCTCCCACTGAGAGCGCAAATGCCGGGGCTTTAAAGATTCAAAACAGAGCGTTCGTGATGCTCATGTGCAGTATGGTTCAAAAGTTTGGCAGCAATAGATGTAGAAGTCTCACAGAGGGAGACGAGGAGGAGTGGGAGCAGCAGTGTTTCTGGCACACGGAGCTGAAGACCGTGATGAACCGAGCAAATGTGTCCATGGAGAGACTACGGAGAGAACGGAATCAGCTGTCGGCACAGGATCCGGACTGGAGTTTGAGAGAGCAGGAACTGTGGGAGCAATTATTGCAGAGACAAGCAGAGCTGGACGCTGTGCTCTCATCTCTGCGCTGTGCTCGTCAGGTCTGCCAGCTGCGTGCTGAAACTGCTCAGTCTTTGGTGTCTGGCACTTTCTGGTTTAAGGATTTCGGTGTGCTGCAGCCCAGGGGTGTCAGAAACCCTCTGAAAGTAATAGCCATGACTCAGCAGAAAATCCTTCCTCGGCTCGAACGACTTATTCAGCTGCTGGAAGAAAGCAAAGCACTTGGCCAGTCGACTAGCACGCAGCGACAGCAGAGCTCTAGTGTCTCAACTCAGTCCTTTAAAGATCAAATAAAGGCTTCGTCTGTGAGTGAACAGAATGCCACGGTGCCCTCTCTTCCTCTGTCAAACCCGTCTTACGCTCAGAAAAGCCAGGAGAAAACGCAGCTGAACAGCCAGGATGTCCGATCTCTCCTGGAGCCTGGTGCGTCTGCACATACGAGTATCCCAAAGCTTGCAGGTCAGAGCATTTCAGTGGAGGACTTGTGTAACCCAGTAGGAGGACTGGTCCAGACTGGTAGCGCTGTCTCCTCTCTTCCAGCTGATGAAGGAAGTGGAGCAGCAGCTCAGGGATTGTGCCAGAGACAGAGGCCTGATGAAGATCCAGCCCTCAGCTTCTTCAATGCATTTAATCACAACTTATTTGTTGAAGTTTGCACTAATAAAGAGTGGTCAAACAGAGTGGAAGTGGGATTGTGTTCAGGTTCCAGTCGTCCATTCATGGACTTCATGGATGCGCAGTGGGAGTGTGAAGGAAAGCTGATTCAAATACCAACAGTAACTCTTCAGCTGGCTTCAAGTCTTCCTACCAACGACTACCATAACAATGCATTCCGTAACTCTTTCTATTATCAGGTTTTACAGGTGGGCCTCAGTGAGCTTTTCCATTCCAGACTGGGACAAGCGGACAGTCCTGAACATAATAGAATGAAAGATTTGGCGTCTGATGGAGCTCTCGATGGTCTTCTATTGGAAAGAGTGCAGAAACCAAGTCCTGGGATTTTCTCTGAggatGAGGTTTTGGGCCGTCTCAGCAAGTACAGAGAGGCTTCAGTTTATCGCCGAGTCGAGAGTCTTCTGAAAGAGCCTCCTAAGAGCCTGGAGATCCACCTCAACACTGACCCGTCACTCAACCACGGCACAGACAGCCAAGACGCCGCTCCTCAGTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-503 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000157216

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018945 lncRNA upstream 22002 21780598 ~ 21860417 (+) False XLOC_008474
TCONS_00016971 lncRNA downstream 6668 21950231 ~ 21952715 (+) True XLOC_008477
TCONS_00018949 lncRNA downstream 407802 22351365 ~ 22366522 (+) False XLOC_008483
TCONS_00018950 lncRNA downstream 409462 22353025 ~ 22366522 (+) True XLOC_008483
TCONS_00018951 lncRNA downstream 597781 22541344 ~ 22551028 (+) False XLOC_008488
TCONS_00018952 lncRNA downstream 597801 22541364 ~ 22558972 (+) False XLOC_008488
TCONS_00016968 mRNA upstream 9595 21862373 ~ 21872824 (+) True XLOC_008475
TCONS_00016967 mRNA upstream 10948 21862295 ~ 21871471 (+) False XLOC_008475
TCONS_00016963 mRNA upstream 109580 21744680 ~ 21772839 (+) False XLOC_008473
TCONS_00016962 mRNA upstream 162449 21712328 ~ 21719970 (+) True XLOC_008472
TCONS_00016961 mRNA upstream 165252 21711671 ~ 21717167 (+) False XLOC_008472
TCONS_00016970 mRNA downstream 3554 21947117 ~ 21981546 (+) False XLOC_008477
TCONS_00016973 mRNA downstream 70466 22014029 ~ 22024954 (+) True XLOC_008479
TCONS_00016974 mRNA downstream 324284 22267847 ~ 22286918 (+) True XLOC_008480
TCONS_00016975 mRNA downstream 368240 22311803 ~ 22325973 (+) True XLOC_008481
TCONS_00016976 mRNA downstream 390215 22333778 ~ 22348626 (+) True XLOC_008482
TCONS_00016964 other upstream 112410 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016960 other upstream 166754 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016955 other upstream 434619 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016954 other upstream 444460 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016953 other upstream 444691 21437633 ~ 21437728 (+) True XLOC_008468
TCONS_00016972 other downstream 59519 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016979 other downstream 470561 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016984 other downstream 779119 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other downstream 779149 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016990 other downstream 1434508 23378071 ~ 23378188 (+) True XLOC_008494

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_04197826_04201434.mRNA True 612 mRNA 0.52 4 CI01000072 4197826 ~ 4201434 (-)