RNA id: TCONS_00003022


Basic Information

Item Value
RNA id TCONS_00003022
length 582
lncRNA type antisense_over
GC content 0.39
exon number 4
gene id XLOC_000072
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6379878 ~ 6554470 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGAAGTACCTTCAACTTCAGTCTCAGCACTTTCAACTAAATATCTAAAGAAAAAGTAGTCTAAATGTCAGGAAGGAGAAGAAAACCATCAAATTTATGAACAATTTTAGCCAGTTTCAGCTGTCTGAGAGGAAAAAAAGagacatcattcttcaaaacgtctTTTGTCTTGCACTGAAGAAAGAAGGTTTGGAGCGacacgaggAGTGGAACCTGCCAGAAGGTGCCCTGAACTGCGGAGACCTTTAAACCCAGTCCATGGAGACGGGTGGATTAAGGCAGCTGCGAGTCATGATTGACAGCTGTCCGTCAGCAGGGGCTCATTTAAATATATCGCAGTTCAGAatgcatgcttatgtgtgtgcgtttgtttttTATCATAAATAGAAGTTGATGCAAAAACTTGGCAGGATGTGGTGATGGTcgcaagttatttattatttttaaaaaaagagattagcatttttttgtcatttgtgtTGTTATTTACTCTCCCGCTATGGCACTCTAAGTATGCAAATGACTTCCTTTGGAATACAAATGGGGATGTTTTCTTTTGAAAATGCTGGGTAAATGTTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000137 lncRNA upstream 183115 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00000135 lncRNA upstream 194346 6182344 ~ 6185532 (+) True XLOC_000067
TCONS_00000133 lncRNA upstream 200322 6173484 ~ 6179556 (+) False XLOC_000067
TCONS_00000131 lncRNA upstream 202541 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000128 lncRNA upstream 213324 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00000148 lncRNA downstream 110563 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003024 lncRNA downstream 204713 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000153 lncRNA downstream 402443 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00000155 lncRNA downstream 537803 7092273 ~ 7095474 (+) False XLOC_000082
TCONS_00000156 lncRNA downstream 537803 7092273 ~ 7115914 (+) True XLOC_000082
TCONS_00000143 mRNA upstream 13812 6357059 ~ 6366066 (+) True XLOC_000071
TCONS_00000142 mRNA upstream 50586 6307305 ~ 6329292 (+) True XLOC_000070
TCONS_00000141 mRNA upstream 107732 6243906 ~ 6272146 (+) True XLOC_000069
TCONS_00000140 mRNA upstream 135900 6226135 ~ 6243978 (+) False XLOC_000069
TCONS_00000139 mRNA upstream 139360 6225493 ~ 6240518 (+) False XLOC_000069
TCONS_00000144 mRNA downstream 85967 6640437 ~ 6646356 (+) True XLOC_000074
TCONS_00000145 mRNA downstream 92059 6646529 ~ 6662926 (+) False XLOC_000075
TCONS_00000146 mRNA downstream 92102 6646572 ~ 6664123 (+) False XLOC_000075
TCONS_00000147 mRNA downstream 92146 6646616 ~ 6662821 (+) True XLOC_000075
TCONS_00000150 mRNA downstream 262822 6817292 ~ 6925103 (+) False XLOC_000079
TCONS_00000134 other upstream 194346 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 877794 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 892716 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 929434 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 961371 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000149 other downstream 233220 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 509367 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2599624 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2600523 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 2664178 9218648 ~ 9221616 (+) True XLOC_000115

Expression Profile

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