RNA id: CI01000073_00790983_00791279.mRNA



Basic Information


Item Value
RNA id CI01000073_00790983_00791279.mRNA
length 996
RNA type mRNA
GC content 0.38
exon number 1
gene id CI01000073_00790983_00791279
representative True

Chromosome Information


Item Value
chromosome id CI01000073
NCBI id null
chromosome length 1307889
location 790526 ~ 791521 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAATGCTGCAACCATTTTAACTTCAACATGCCATTCATCTGTTCAAAATCAATTATGTTTAAACCACCCAGGTCATAGGGTTTGACTATATCATTTTTCTTAATAATATTTTACGTTTTGTTTTTTTGTTTTTAACGAAAGTGCAAATTAAAATGACGGAGAAACAGCGAGCCTTCCTCAAAAAGGACCTCAGATGAGGCGCTCTATATATCGCCTGCTTGAAATTATATGAATATTTGTGTAAAGCTTGAATAACAATAAAACTGCATACTTATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATACAAATAAGTTTTATTATTTCATCTTAACGATTATCACGGGATTGATTTGCTATACATAAGTATTACAAACATTATAGACTACCTATTTACGCGACGCGGCGCGATCAGGACCTGCAAACATGGGATCGAAGAAGCATCGTAGGAGCCGATCGCGGTCCCTCTCTCGAGAAAGATCCAGCAGACATGTCCGCTCGTCAGAGGACAGACACGGTCGGAACCGTTCACCTGTGAAGGGTTCTCGCAGACGAAGCCGGTCTGACAGCGGCGGCTCTAGGAGCAGCGGAGCTTCCGCAGGCCCGAGCCGACACAGAGGCAGAGAGTCCGGCCACTCCAGCGACTCTGACCGCTATCAGAGAGACAGAAGAGTACGATCACACGGAAGATCAAAAGACAGAGACAGGTACTTAAAAACATAGACACAAATAGTAAAAATATTCTGTAGGAATTTTAGTTTATCCAGTGGGAGTCCGTGGAAATGTTTAAAGAAAAACAGTGTAGAAATGACAAATAACAGTACTAACAAGTGGAAAGGCGTAATAATGTAACGTAGTAGGCAAGACAAGGCACGTTTATTTATATAGCTCTTTTTATACACAGTGCTAATTCAAGTGCTTTAAAAGGAAAAAGTAATCATAAAAAGGCTAATAAGAAACAAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU326112 lncRNA upstream 14721 774636 ~ 775805 (+) True G287649
TU326119 lncRNA upstream 25295 761938 ~ 765231 (+) True G287656
TU326120 lncRNA upstream 25764 759073 ~ 764762 (+) True G287657
TU326127 lncRNA upstream 48088 741461 ~ 742438 (+) True G287664
TU326184 lncRNA upstream 50257 739811 ~ 740269 (+) True G287720
TU326223 lncRNA downstream 14128 805649 ~ 805757 (+) True G287755
TU326226 lncRNA downstream 20033 811554 ~ 811757 (+) True G287757
TU326211 lncRNA downstream 21108 812629 ~ 815102 (+) True G287743
TU326207 lncRNA downstream 45879 837400 ~ 842643 (+) False G287740
TU326208 lncRNA downstream 48108 839629 ~ 842643 (+) True G287740
CI01000073_00688992_00691075.mRNA mRNA upstream 99272 688992 ~ 691254 (+) True CI01000073_00688992_00691075
CI01000073_00638193_00673213.mRNA mRNA upstream 116825 638193 ~ 673701 (+) True CI01000073_00638193_00673213
CI01000073_00627723_00630714.mRNA mRNA upstream 159334 627723 ~ 631192 (+) True CI01000073_00627723_00630714
CI01000073_00591004_00626411.mRNA mRNA upstream 163345 591004 ~ 627181 (+) True CI01000073_00591004_00626411
CI01000073_00543374_00545899.mRNA mRNA upstream 244627 543374 ~ 545899 (+) True CI01000073_00543374_00545899
CI01000073_00792429_00801911.mRNA mRNA downstream 908 792429 ~ 802248 (+) True CI01000073_00792429_00801911
CI01000073_00805997_00811146.mRNA mRNA downstream 14476 805997 ~ 811165 (+) False CI01000073_00805997_00811146
CI01000073_00925356_00926204.mRNA mRNA downstream 132192 923713 ~ 926721 (+) True CI01000073_00925356_00926204
CI01000073_01036546_01038321.mRNA mRNA downstream 244934 1036455 ~ 1038388 (+) True CI01000073_01036546_01038321
CI01000073_01099082_01112685.mRNA mRNA downstream 307319 1098840 ~ 1113138 (+) True CI01000073_01099082_01112685
TU326092 other upstream 72125 709044 ~ 718401 (+) False G287638
TU326097 other upstream 72125 709044 ~ 718401 (+) True G287638
TU325807 other upstream 590754 190944 ~ 199772 (+) True G287391
TU325739 other upstream 699803 89382 ~ 90723 (+) True G287343
TU325736 other upstream 740080 48125 ~ 50446 (+) False CI01000073_00048073_00049706

Expression Profile