RNA id: TU326348


Basic Information

Item Value
RNA id TU326348
length 1271
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G287864
representative False

Chromosome Information

Item Value
chromosome id CI01000073
NCBI id null
chromosome length 1307889
location 1081698 ~ 1083125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAAAAGAAGGAAAGAAAGAAAACATTATCCATAAACACACACAATGCATCTTACATCATAGGGGGACACATCATAACCTCATTATACAGACATGTACCTGGAAATATACAGTAATTTTCTTGCAGATCTCGATACAGATATGTGACTCAGCGTGACTAGAAATACAGCAAATTAGCTTCATATCGCTATACAAAATTGTCAGTCGGCATACAGTTTTTTAGAGTTATCAGATAAGGTTGTGCTGCGTCATTTCAAATGATCATTATGTGGAGTTTTATTGTGGAGTCTGACAGAGTAAATCGACTCTGTCCAGCTCTCACAGTCAAAGGTTCGACATTATTGCTCGGTTGTTCAGAGATGTGAATACTAACCCTTTTTATTTAGAGCTCTATAAAGCAAATGACAAGAAACATTCTACCATTCTTTTCATATATTATACTAATGTGGACAATTTAATCTCGGAAAGTCATAATATACACTGAAATTGCACGCTATAATTAGTCCATTTTCATTTTGATTTATATCTTATCTATTACATGCATACTGAAATCGGCACACCACCTGCTTTAACACAAAGTTTGCTATGCTCATTATGACATTGTGTCAACAAACAAAACTATTTTTCCTGCAGTCTAAATCAGATTTTGTTTTAGTGGCAGCATTTTGACGACAAATATGCAGTGCGTTAAGCAAAAACTGAAATGTTCCTGAGTACACACTGCATTTTACAGGAGTCAGGGTCTTAAAGATGTCTTCAAAGTCTTACAGACATCAGGATAAAAAACAAGTACTGACCTTAGGTGATGCATAGCAAACAAGATGTTAAAGAGGCTGCAATGCCTATATAAAGGAACAGTTCACTCAAAAATGAAAACTCATAATTTACTCTCCCTCATGGTGTTTAAAACCTCTCTGACTTCTTACTTTGAAGATTTTATGAGCTGCTTTAAAAAAAAAATGAAATAAAAAGACCTTAAAGAGGGTCAAAAAGAGACAAAAATCACCATTAAAGTATCATAAACAAGCTGTACGATTGCTTTGTATGAGGAACACAAAAAATGTAAAGGGATAGTCAACCCAAAAATGAAATGTGTCATTATTTGCTCACCCTCATGTCATTCCAAACTTGTATGACTTAATTTCTTCTCTGGAACGTAAAAGAAGATACTTTGAAGAATGTTGATAACCAAACAAGTTTCTTTTCCCATTGGCTTCCATTGTTTGGACAAGAAATACAATGGAAAGTAATGTGAACCCAAACTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326330 lncRNA upstream 5520 1076097 ~ 1076335 (+) True G287860
TU326329 lncRNA upstream 6097 1075477 ~ 1075758 (+) True G287859
TU326201 lncRNA upstream 195961 882760 ~ 885894 (+) True G287735
TU326207 lncRNA upstream 239212 837400 ~ 842643 (+) False G287740
TU326371 lncRNA downstream 88194 1171319 ~ 1173975 (+) True G287880
TU326391 lncRNA downstream 189701 1272826 ~ 1273425 (+) True G287899
CI01000073_01036546_01038321.mRNA mRNA upstream 43467 1036455 ~ 1038388 (+) True CI01000073_01036546_01038321
CI01000073_00925356_00926204.mRNA mRNA upstream 155134 923713 ~ 926721 (+) True CI01000073_00925356_00926204
CI01000073_00805997_00811146.mRNA mRNA upstream 270690 805997 ~ 811165 (+) False CI01000073_00805997_00811146
CI01000073_00792429_00801911.mRNA mRNA upstream 279607 792429 ~ 802248 (+) True CI01000073_00792429_00801911
CI01000073_00790983_00791279.mRNA mRNA upstream 290334 790526 ~ 791521 (+) True CI01000073_00790983_00791279
CI01000073_01099082_01112685.mRNA mRNA downstream 15715 1098840 ~ 1113138 (+) True CI01000073_01099082_01112685
CI01000073_01130335_01140889.mRNA mRNA downstream 46756 1129881 ~ 1142142 (+) True CI01000073_01130335_01140889
CI01000073_01161805_01169094.mRNA mRNA downstream 78680 1161805 ~ 1170873 (+) True CI01000073_01161805_01169094
CI01000073_01200849_01245031.mRNA mRNA downstream 117724 1200849 ~ 1245138 (+) True CI01000073_01200849_01245031
CI01000073_01250321_01255305.mRNA mRNA downstream 167196 1250321 ~ 1255319 (+) True CI01000073_01250321_01255305
TU326092 other upstream 363454 709044 ~ 718401 (+) False G287638
TU326097 other upstream 363454 709044 ~ 718401 (+) True G287638
TU325807 other upstream 882083 190944 ~ 199772 (+) True G287391
TU325739 other upstream 991132 89382 ~ 90723 (+) True G287343
TU325736 other upstream 1031409 48125 ~ 50446 (+) False CI01000073_00048073_00049706

Expression Profile