RNA id: CI01000075_00164716_00172975.mRNA


Basic Information

Item Value
RNA id CI01000075_00164716_00172975.mRNA
length 1460
RNA type mRNA
GC content 0.48
exon number 10
gene id CI01000075_00164716_00172975
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 164361 ~ 172975 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCTCTTCCTGAAGATGGTGATTTAGATGGACTCACTGACAACACTTCTCATCATGCCGCTCTGACGGCTGATCATGTGGAATCTGTCCGACAAAAGCGCCGCACACTGGTCGCTCCGGATATTAACCTGTCGCTGGACAAAAGTGAAGGTTCAGTCCTTTCTGACGACTTCCTGGAAACACCAGACGACCTGGACATAAACGTGGACGACATGGACACGCCGGACGATGACTCTCTCGGGTCCATCAACAATGGCACCGAGCTGGAATGGGAAGATGACACTCCAGTGGCCAGTGCGAAGGGTCCGGGTGGTGGTGATGGGGACGGCACAGGTCGTCTGTGGAGGACGGTGATCATTGGTGATCAGGAACACAGGATAGACATGCAGGTGATCAGGCCGTACCTGCGTGTCGTCACGCATGGAGGTTACTACGGTGAAGGACTGAATGCTATCATCGTTTTTGCTGCCTGTTACCTGCCCGACAGCGGCTGTGCCGACTACAATTACATCATGGAGAACCTCTTCCTGTACGTGATCAGTAGTTTGGAGCTGCTGGTAGCTGAAGACTACATGATCATCTATCTGAACGGAGCCACGCCGCGCAGGAGAATGCCGGGCATCAGCTGGCTCAAGAGATGCTACCAGATGATCGAAAGACGGTTAAGAAAGAATCTCAAATGTCTGATCATTGTGCATCCCTCCTGGTTCATCCGTACAGTTCTGGCCATCTCACGGCCCTTTATCAGTGTGAAATTTATGGATAAGATCCGTTACGTCCAGAGTCTGGAGGAACTGGCTCAGATTGTTCCCATGGAGCATGTGCAGATTCCCGAGTGTGTGCTGCAATGTGAAGAGGAGCGAATCAAAGCGCAGAGAGAAAGTATTTGTTTTGAATCTAATTCTGATTGGTGTATTATTTGGCAGGCCGCCCTCAGTGGCTGCAGAGGCCTGTCCCTGACGCGTCTCAATGGAACAGCAGCCGCACCGTCCCTGCCCCGATCACTGCTATTTTTGACCAGACTACTGACCGGTGCAAGGGCAATATCCCGTGGGGCATTGGGTTATCGACCCTCGTGTGCATCTTTCTTCAGTGTTGAGGAGTAACTGAAAGGGATAGTTGAAAATTTTGTAATTATTTACTCTTACTCCTTTAATCTTGCAGCTCATTTCCATATAATCCACAATTGTTTGCAACCATCAGTGTCAAGGACAAACACCATAAAGGTGGTCTATATGACTCAGACTGAAATTTATGTCAGGTTTGGTCATGAGACCTGCGAAAACTAATGACAGTGTCATTGACGTCCGCTCTGACATGACGTGAAGTGCAGCGGCCATGTTTGATTTGAGAGCGACAGCAAAATGGAAGATTTTCAGTTAATAATGATTTAAATTTCTGTCAGTTCTTCTGAAGCTTTTTTGTATAAACTCAGATGACTTGAAATGTAAATATATTAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process

KEGG:

id description
K18450 ATCAY; caytaxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327810 lncRNA downstream 35060 125820 ~ 129301 (-) True G289035
TU327801 lncRNA downstream 65807 98347 ~ 98554 (-) True G289027
TU327763 lncRNA downstream 67320 93529 ~ 97041 (-) True G289002
TU327770 lncRNA downstream 142026 21726 ~ 22335 (-) False CI01000075_00022145_00044289
TU327765 lncRNA downstream 147909 15536 ~ 16452 (-) True G289003
TU327854 lncRNA upstream 56795 229770 ~ 230171 (-) True G289072
TU327841 lncRNA upstream 79910 252885 ~ 256328 (-) False G289060
TU327842 lncRNA upstream 81161 254136 ~ 256328 (-) True G289060
TU327858 lncRNA upstream 98419 271394 ~ 273130 (-) False G289076
TU327859 lncRNA upstream 98419 271394 ~ 273130 (-) True G289076
CI01000075_00152252_00155011.mRNA mRNA downstream 9231 151922 ~ 155130 (-) True CI01000075_00152252_00155011
CI01000075_00142446_00146058.mRNA mRNA downstream 18303 141767 ~ 146058 (-) True CI01000075_00142446_00146058
CI01000075_00080935_00083813.mRNA mRNA downstream 78213 80086 ~ 86148 (-) True CI01000075_00080935_00083813
CI01000075_00059491_00078552.mRNA mRNA downstream 85809 59491 ~ 78552 (-) True CI01000075_00059491_00078552
CI01000075_00022145_00044289.mRNA mRNA downstream 120072 20947 ~ 44289 (-) False CI01000075_00022145_00044289
CI01000075_00267234_00274802.mRNA mRNA upstream 94141 267116 ~ 274802 (-) True CI01000075_00267234_00274802
CI01000075_00275752_00278496.mRNA mRNA upstream 102263 275238 ~ 278542 (-) False CI01000075_00275752_00278496
CI01000075_00281734_00287747.mRNA mRNA upstream 108570 281545 ~ 287772 (-) True CI01000075_00281734_00287747
CI01000075_00305485_00307473.mRNA mRNA upstream 132319 305294 ~ 308340 (-) True CI01000075_00305485_00307473
CI01000075_00307523_00328194.mRNA mRNA upstream 134548 307523 ~ 331562 (-) False CI01000075_00307523_00328194
TU327813 other downstream 49756 108703 ~ 114605 (-) True G289036
TU327766 other downstream 108597 33101 ~ 55764 (-) False G289004
TU327862 other upstream 103378 276353 ~ 278540 (-) True CI01000075_00275752_00278496
TU327902 other upstream 147535 320510 ~ 321275 (-) True G289113
TU327838 other upstream 151548 324523 ~ 328317 (-) False CI01000075_00307523_00328194
TU327958 other upstream 597119 770094 ~ 788399 (-) True G289167
TU328267 other upstream 1319348 1492323 ~ 1515938 (-) True G289427

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031647 False 10011 mRNA 0.37 13 NC_007113.7 55914699 ~ 55970970 (+)