RNA id: TCONS_00000145


Basic Information

Item Value
RNA id TCONS_00000145
length 1027
RNA type mRNA
GC content 0.46
exon number 10
gene id XLOC_000075
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6646529 ~ 6664123 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAACAACTTCCGGCTTCTAAACCGCTCAGGCAGCGGAAATCATTAAACTCGGCGGAACTAATCCTCGCATCGTTCCACtcaattttgtttcttttatcgACGTTCAGCATATTTTATCTTGAAGTTGTTTTGGGGGGAAAACGTGCAAAATTCACGTCTGGTGTCCCGATTATGGTGTAAACAGGGCAGTTCAGTCACTCTGACAGCGGCAGGTGTGTTAGGGTGTGTATGTTGGTCTGTGGGGATGCTGACGTTAGCCAGTAAGCTGAAGAGGGAGGAGGGCGTAAGGGCCGGCCGGACCCCTGCAGGCTCTAACGATGCCGCTCATAGAGTGTCCATCAGAGATCGACTGCTCATCAAAGAGGTTGCAGAACTTGAGGCCAACCTTCCAAGTACATGTAAAGTTACATTTCCTGATGAAAACAAACTCTGTCACTTCCAGTTGGCCATTTCTCCAGATGAAGGCTATTACCTTGGTGGAAAGTTTCAGTTTGAGATCGAAGTTCCTGAAGCCTATAATATGGTGCCTCCCAAAGTGAAGTGCTTGACTAGAATATGGCACCCGAACATTGCAGAAACGGGCGAGATTTGTCTGAGTTTATTGCGAGAGCATTCAATTGATGGTACTGGATGGGCACCCACTCGTACTctaaagGATGTAGTATGGGGACTGAATTCACTCTTCACTGATCTTCTTAACTTTGATGACCCACTGAATATAGATGCAGCAGAGCATCATTTACGAGATAAGGAGGATTTCAGGAACAAAGTTCAGGACTTCATCAAAAACTATGCAAGATGATGTGTGTCTGCCACGCGAGCCACTCTCACATGCATGTGACCGATGTACGTCGATCAAGACTGCAACCGAGGCAAAATCTCATTATTAAAACATTCTTCGGGGAGGGGGGGGGAAGAAGCAAGTTAAAATAAGTGTTGAATGACACTGCGAGTCACATCTCAAGATATTTGGGAAGGATCAGGGCCGTACTGTCTATTTTTGatggcttattattattattttgg

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0061654 NEDD8 conjugating enzyme activity molecular_function
GO:0019788 NEDD8 transferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-2557 Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)).

Ensembl:

ensembl_id ENSDART00000144641

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003022 lncRNA upstream 92059 6379878 ~ 6554470 (+) True XLOC_000072
TCONS_00003023 lncRNA upstream 243306 6398210 ~ 6403223 (+) True XLOC_000073
TCONS_00000137 lncRNA upstream 449766 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00000135 lncRNA upstream 460997 6182344 ~ 6185532 (+) True XLOC_000067
TCONS_00000133 lncRNA upstream 466973 6173484 ~ 6179556 (+) False XLOC_000067
TCONS_00000148 lncRNA downstream 2107 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003024 lncRNA downstream 96257 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000153 lncRNA downstream 293987 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00000155 lncRNA downstream 429347 7092273 ~ 7095474 (+) False XLOC_000082
TCONS_00000156 lncRNA downstream 429347 7092273 ~ 7115914 (+) True XLOC_000082
TCONS_00000144 mRNA upstream 173 6640437 ~ 6646356 (+) True XLOC_000074
TCONS_00000143 mRNA upstream 280463 6357059 ~ 6366066 (+) True XLOC_000071
TCONS_00000142 mRNA upstream 317237 6307305 ~ 6329292 (+) True XLOC_000070
TCONS_00000141 mRNA upstream 374383 6243906 ~ 6272146 (+) True XLOC_000069
TCONS_00000140 mRNA upstream 402551 6226135 ~ 6243978 (+) False XLOC_000069
TCONS_00000150 mRNA downstream 154366 6817292 ~ 6925103 (+) False XLOC_000079
TCONS_00000151 mRNA downstream 154366 6817292 ~ 6925407 (+) False XLOC_000079
TCONS_00000152 mRNA downstream 199991 6862917 ~ 6925113 (+) True XLOC_000079
TCONS_00000157 mRNA downstream 526930 7189856 ~ 7448084 (+) False XLOC_000083
TCONS_00000158 mRNA downstream 751392 7414318 ~ 7448795 (+) True XLOC_000083
TCONS_00000134 other upstream 460997 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 1144445 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 1159367 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 1196085 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 1228022 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000149 other downstream 124764 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 400911 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2491168 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2492067 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 2555722 9218648 ~ 9221616 (+) True XLOC_000115

Expression Profile

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