RNA id: TU373537


Basic Information

Item Value
RNA id TU373537
length 304
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G328650
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1299347 ~ 1299650 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCTTGATTTGCCCCGGTGATCATTACTAAGCGTTTTCTTGTGGACTGTTTCCTGGTTTCCGTTGGACTGTTTATTCTTTGTGATTCTCTGCTGCCTGCCCTGATCCTTGCCTGTGTACTGGACTGTGTTTGTTTGCCGCCTGCCCTGATCTCTGCCTGTGACTCGATACTGTTTGCCTGCTGCCTGCCTCGACCCTTGCCTGTCCTTGTTTATGTTCCTGCCTTTGCCCCTGTCTACCTGTGTAAATACTGTTCTTAATAAAGCTTGCAAATGGATCCCCGCTCTGCCGACCCATCATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373530 lncRNA downstream 11492 1287625 ~ 1287855 (-) True G328643
TU373527 lncRNA downstream 22162 1276933 ~ 1277185 (-) True G328640
TU373332 lncRNA downstream 66229 1232126 ~ 1233118 (-) True G328457
TU373327 lncRNA downstream 72286 1226846 ~ 1227061 (-) True G328454
TU373228 lncRNA downstream 137826 1158493 ~ 1161521 (-) True G328367
TU373541 lncRNA upstream 5797 1305447 ~ 1305725 (-) True G328654
TU373564 lncRNA upstream 78079 1377729 ~ 1379442 (-) True G328677
TU373577 lncRNA upstream 157973 1457623 ~ 1458490 (-) True G328686
TU373611 lncRNA upstream 169663 1469313 ~ 1469515 (-) True G328715
TU373605 lncRNA upstream 194319 1493969 ~ 1494368 (-) True G328709
CI01000112_01120464_01124295.mRNA mRNA downstream 175052 1120087 ~ 1124295 (-) True CI01000112_01120464_01124295
CI01000112_01092142_01094413.mRNA mRNA downstream 204866 1091672 ~ 1094481 (-) True CI01000112_01092142_01094413
CI01000112_01027075_01062602.mRNA mRNA downstream 236745 1027075 ~ 1062602 (-) True CI01000112_01027075_01062602
CI01000112_01010850_01018328.mRNA mRNA downstream 280010 1010689 ~ 1019337 (-) True CI01000112_01010850_01018328
CI01000112_01001591_01002671.mRNA mRNA downstream 296543 1001578 ~ 1002804 (-) True CI01000112_01001591_01002671
CI01000112_01324078_01345821.mRNA mRNA upstream 24428 1324078 ~ 1345821 (-) True CI01000112_01324078_01345821
CI01000112_01367862_01375489.mRNA mRNA upstream 67801 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01437714_01440420.mRNA mRNA upstream 137807 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01486968_01488917.mRNA mRNA upstream 185721 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01517833_01520418.mRNA mRNA upstream 218078 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
TU373529 other downstream 12389 1286655 ~ 1286958 (-) True G328642
TU373528 other downstream 12823 1286092 ~ 1286524 (-) True G328641
TU373156 other downstream 430711 868518 ~ 868636 (-) True G328308
TU373157 other downstream 504401 794847 ~ 794946 (-) True G328309
TU373187 other downstream 517563 780164 ~ 781784 (-) True G328332
TU374646 other upstream 330126 1629776 ~ 1633322 (-) True G329587
TU374605 other upstream 498366 1798016 ~ 1800658 (-) False G329559
TU374607 other upstream 498366 1798016 ~ 1809739 (-) False G329559
TU374601 other upstream 509570 1809220 ~ 1809739 (-) True G329559
TU374625 other upstream 692016 1991666 ~ 1997859 (-) True G329569

Expression Profile