RNA id: TU373541


Basic Information

Item Value
RNA id TU373541
length 279
lncRNA type intronic
GC content 0.51
exon number 1
gene id G328654
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1305447 ~ 1305725 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCAGATCAAGATGAGGCCAAACTTCACTCAATCTTAAAGACAGCTCACCACAGCGGCCCACAGAGGGCCGACACACTTAATGACACTGTCTAGATAGAGCCCAAGAGAGCTGAGGCCTCAACCAAAAGATTCTCAGATCAAGAGGAGGCCAAACCACACTCAAGGCTAAAAGACAGCTCACCACAGCGGCCCAGAGAGGTCCGACACACTTGATGTCACTGTCTAGCTTGAGCTCAGGAGAGCGGAGGCCTCAACAGCTTTGTTTAATAGGAAGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373537 lncRNA downstream 5797 1299347 ~ 1299650 (-) True G328650
TU373530 lncRNA downstream 17592 1287625 ~ 1287855 (-) True G328643
TU373527 lncRNA downstream 28262 1276933 ~ 1277185 (-) True G328640
TU373332 lncRNA downstream 72329 1232126 ~ 1233118 (-) True G328457
TU373327 lncRNA downstream 78386 1226846 ~ 1227061 (-) True G328454
TU373564 lncRNA upstream 72004 1377729 ~ 1379442 (-) True G328677
TU373577 lncRNA upstream 151898 1457623 ~ 1458490 (-) True G328686
TU373611 lncRNA upstream 163588 1469313 ~ 1469515 (-) True G328715
TU373605 lncRNA upstream 188244 1493969 ~ 1494368 (-) True G328709
TU373613 lncRNA upstream 189332 1495057 ~ 1495280 (-) True G328717
CI01000112_01120464_01124295.mRNA mRNA downstream 181152 1120087 ~ 1124295 (-) True CI01000112_01120464_01124295
CI01000112_01092142_01094413.mRNA mRNA downstream 210966 1091672 ~ 1094481 (-) True CI01000112_01092142_01094413
CI01000112_01027075_01062602.mRNA mRNA downstream 242845 1027075 ~ 1062602 (-) True CI01000112_01027075_01062602
CI01000112_01010850_01018328.mRNA mRNA downstream 286110 1010689 ~ 1019337 (-) True CI01000112_01010850_01018328
CI01000112_01001591_01002671.mRNA mRNA downstream 302643 1001578 ~ 1002804 (-) True CI01000112_01001591_01002671
CI01000112_01324078_01345821.mRNA mRNA upstream 18353 1324078 ~ 1345821 (-) True CI01000112_01324078_01345821
CI01000112_01367862_01375489.mRNA mRNA upstream 61726 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01437714_01440420.mRNA mRNA upstream 131732 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01486968_01488917.mRNA mRNA upstream 179646 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01517833_01520418.mRNA mRNA upstream 212003 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
TU373529 other downstream 18489 1286655 ~ 1286958 (-) True G328642
TU373528 other downstream 18923 1286092 ~ 1286524 (-) True G328641
TU373156 other downstream 436811 868518 ~ 868636 (-) True G328308
TU373157 other downstream 510501 794847 ~ 794946 (-) True G328309
TU373187 other downstream 523663 780164 ~ 781784 (-) True G328332
TU374646 other upstream 324051 1629776 ~ 1633322 (-) True G329587
TU374605 other upstream 492291 1798016 ~ 1800658 (-) False G329559
TU374607 other upstream 492291 1798016 ~ 1809739 (-) False G329559
TU374601 other upstream 503495 1809220 ~ 1809739 (-) True G329559
TU374625 other upstream 685941 1991666 ~ 1997859 (-) True G329569

Expression Profile