RNA id: TU373613


Basic Information

Item Value
RNA id TU373613
length 224
lncRNA type intronic
GC content 0.26
exon number 1
gene id G328717
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1495057 ~ 1495280 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATGTCACCATCAGTATAATTATCATTTTTTTCCATGACGACATATTTAAAAGGAATCCTGACATAAGTTTTTTTTAGCAAATATTTAGTTAGTATTCAGTGGTATCCAACAGTTTATAAGATGTAAACAAACACAAGGACATTCATAAGAAGCAAATCTTACTATAAAAGTACTTTTACTTACTATTAATGAGTTTTGATCCATAATATAAATGACACTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373605 lncRNA downstream 689 1493969 ~ 1494368 (-) True G328709
TU373611 lncRNA downstream 25542 1469313 ~ 1469515 (-) True G328715
TU373577 lncRNA downstream 36567 1457623 ~ 1458490 (-) True G328686
TU373564 lncRNA downstream 115615 1377729 ~ 1379442 (-) True G328677
TU373541 lncRNA downstream 189332 1305447 ~ 1305725 (-) True G328654
TU373614 lncRNA upstream 382 1495662 ~ 1496070 (-) True G328718
TU373616 lncRNA upstream 2488 1497768 ~ 1498418 (-) True G328719
TU373630 lncRNA upstream 8910 1504190 ~ 1504765 (-) False G328724
TU373628 lncRNA upstream 9082 1504362 ~ 1504765 (-) True G328724
TU373634 lncRNA upstream 12637 1507917 ~ 1508123 (-) True G328726
CI01000112_01486968_01488917.mRNA mRNA downstream 5556 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01437714_01440420.mRNA mRNA downstream 54549 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01367862_01375489.mRNA mRNA downstream 117683 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01324078_01345821.mRNA mRNA downstream 149236 1324078 ~ 1345821 (-) True CI01000112_01324078_01345821
CI01000112_01120464_01124295.mRNA mRNA downstream 370762 1120087 ~ 1124295 (-) True CI01000112_01120464_01124295
CI01000112_01517833_01520418.mRNA mRNA upstream 22448 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
CI01000112_01772132_01776695.mRNA mRNA upstream 276467 1771747 ~ 1776853 (-) True CI01000112_01772132_01776695
CI01000112_01953215_01962043.mRNA mRNA upstream 457878 1953158 ~ 1962751 (-) False CI01000112_01953215_01962043
CI01000112_01967374_01971965.mRNA mRNA upstream 471778 1967058 ~ 1971965 (-) False CI01000112_01967374_01971965
CI01000112_01999128_02000283.mRNA mRNA upstream 503839 1999119 ~ 2000283 (-) True CI01000112_01999128_02000283
TU373529 other downstream 208099 1286655 ~ 1286958 (-) True G328642
TU373528 other downstream 208533 1286092 ~ 1286524 (-) True G328641
TU373156 other downstream 626421 868518 ~ 868636 (-) True G328308
TU373157 other downstream 700111 794847 ~ 794946 (-) True G328309
TU373187 other downstream 713273 780164 ~ 781784 (-) True G328332
TU374646 other upstream 134496 1629776 ~ 1633322 (-) True G329587
TU374605 other upstream 302736 1798016 ~ 1800658 (-) False G329559
TU374607 other upstream 302736 1798016 ~ 1809739 (-) False G329559
TU374601 other upstream 313940 1809220 ~ 1809739 (-) True G329559
TU374625 other upstream 496386 1991666 ~ 1997859 (-) True G329569

Expression Profile