RNA id: CI01000135_01241553_01250988.mRNA


Basic Information

Item Value
RNA id CI01000135_01241553_01250988.mRNA
length 820
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000135_01241553_01250988
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 1241538 ~ 1251157 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTGTCAGACGTCAGATCTTCACTTCATAAGATTTGTTCCAAAAGCTTAAGTATGCGGCCAAGACAAGCGTCTCCATAAACACACAGAGGCCGTGATAAGGGCGCCACAGCGGGTCTAACTGGGTCAAACTTTCCCAACGCGAGAGAAGAGACTGAGCACGAGCCAAGATGGCCGACGTGTCCGGGCTGATGTCATCTCACGGACAGAGAGACAAAAATGAGGTCATTCAAAATGGCCGTAAGCCTGAGGAAGATCACAGGCTAGCAGAGACAGAAGACACTGAAGACAAGGTGCTCAAACCATTCTCCAACATCGACTGCGAAAGCGCCGGGCACTTCAGTTTACAGCAATTAAACCGGCCAAAAATCCTTACAAAGAGGGCTTCATGGTCTCAAAAAGATCTGTCAGCCGTTCTCCCGTCTCAGCATGTGCTCACACACGGACACCACGGGAAAAACACGACGGTGAGCTGCCCATCACAATTAAGAGCCGCGAGGAACGCACCTATCTGCCGTCCTGAAGCCGTGGAGTCAGAGGACATGACAACCATTTTGTGCAAAATTGGCTACGGAGTGATTTTAGCGGCATTAAACACAGCTGAAGGTGGAGCCGAGAGCACTGACTGGAGGAAACGCTGCGAGACTCGCCCGAAGGAACGAAAAACACAAATGAGATTCTCAGATGTTTCTCCTGACTCAAATACTCTCATGTCTCCTTTAAAGTTTCAAATCTCAACATCATCTCATACTGTGCTCAGATTTACAGACAAAGAGAAAATCCCAAACGAGATCTCTTTACTATAAAGCGATGGGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395351 lncRNA downstream 17520 1223800 ~ 1224018 (-) True G347293
TU395335 lncRNA downstream 25230 1147003 ~ 1216308 (-) False G347279
TU395223 lncRNA downstream 223933 1007695 ~ 1017605 (-) True G347177
TU395312 lncRNA downstream 235252 978233 ~ 1006286 (-) True G347257
TU395305 lncRNA downstream 292362 948966 ~ 949176 (-) True G347250
TU395413 lncRNA upstream 53647 1304804 ~ 1305534 (-) True G347348
TU395456 lncRNA upstream 122138 1373295 ~ 1375456 (-) True G347390
TU395477 lncRNA upstream 176606 1427763 ~ 1428079 (-) True G347410
TU395510 lncRNA upstream 267044 1518201 ~ 1528861 (-) True G347436
CI01000135_01130311_01159673.mRNA mRNA downstream 81865 1130311 ~ 1159673 (-) True CI01000135_01130311_01159673
CI01000135_01069416_01096641.mRNA mRNA downstream 144849 1069163 ~ 1096689 (-) True CI01000135_01069416_01096641
CI01000135_01057682_01067405.mRNA mRNA downstream 174133 1057426 ~ 1067405 (-) True CI01000135_01057682_01067405
CI01000135_01036648_01040176.mRNA mRNA downstream 201362 1036513 ~ 1040176 (-) True CI01000135_01036648_01040176
CI01000135_00949536_00968521.mRNA mRNA downstream 273017 949536 ~ 968521 (-) True CI01000135_00949536_00968521
CI01000135_01402249_01402515.mRNA mRNA upstream 150977 1402134 ~ 1402515 (-) True CI01000135_01402249_01402515
CI01000135_01415988_01419906.mRNA mRNA upstream 164712 1415869 ~ 1419906 (-) True CI01000135_01415988_01419906
CI01000135_01423494_01425551.mRNA mRNA upstream 171920 1423077 ~ 1425555 (-) True CI01000135_01423494_01425551
CI01000135_01482974_01491167.mRNA mRNA upstream 230778 1481935 ~ 1491167 (-) True CI01000135_01482974_01491167
TU395336 other downstream 24712 1147003 ~ 1216826 (-) True G347279
TU395205 other downstream 449593 765586 ~ 766737 (-) False G347167
TU395207 other downstream 464754 765586 ~ 776784 (-) False G347167
TU395013 other downstream 745127 198316 ~ 496411 (-) True G347001
TU395359 other upstream 81207 1332364 ~ 1366129 (-) True G347296

Expression Profile