RNA id: CI01000135_00949536_00968521.mRNA


Basic Information

Item Value
RNA id CI01000135_00949536_00968521.mRNA
length 1497
RNA type mRNA
GC content 0.53
exon number 13
gene id CI01000135_00949536_00968521
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 949536 ~ 968521 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCCGCGTGAATGAGTTTGGGGTCCTGGAGGTCATAACGGACGAGATGGAGGAGGAGAGGGGCAAGAAAGCTCACGCCACCACCACATGGAGCGTCCCCACGGCTCAAGAGGCTCTGTCTGAGCGGCCCGTCTCGAAGGAGGAGACGTCATGGGCCCAGCGCGGCCTGGTGTGTGTGCGCTGTAACAGGAAGGGCTCCGTGGTGGACTTCCTGTCTAATGGACTTCACTGCAGTGAGCGCTGTCTGCAGCAGGAGCAGCAGGAGGAGCTGAAGAGAGAAAGCTCCAGGACGAACGGAGAGGTGCTCGGGAGGAAGAGATCCCGCCTGGCGGAGAGACCCACTGAAGACGTGGACAGCTCCATAGAGGTCGCTGAGGAGGATGACGAGGACTATGAAGAGAAAGAAAGCAGGCGACCAGCACGCGGGGCTACGCGAGGCCGCAGGAAACGCCGAGGAGATGCAGCGCTGCTCAGATACACGGTTCCATATGGAGGCAAGAAGAAGGCGTGGTGTTGGGCCTCGTACCTGGAGCAGGAGAGAGCCATCGCTGCTCCAAGTAAACTGTTCAAAGAGTGTAAGAACGGCTTCAGGGTTGGCATGAGACTGGAGGGTATCGACCCAGAACACCCGTCCATGTACTGCGTCCTCACCATCGCTGAGGTGTTGGGACATCGAATCAGACTGCATTTTGACAAATACTCGGACTGCTATGACTTCTGGATAAATTCCAACTCTCCTGACATCCACCCGGTGGGATGGTGTGAGAAAACCGGACACAAGTTGTATCCACCTAAAGGCAAGAGACACCAGCCGTTCAAAGAATACCCAGAATTCAATCCAAGTGATGAAGAGTTTAGCTGGTCCTCCTACATCAAACTAAATAAAATACAGACGGCACCCAAAGCCCTCTTTCATAATCAGAACATGACAGTGACGCCGTCAGGGTTTAGGGTTGGTATGAAGTTGGAGGCCATCGATAAGAAGAATCCCTCGTTCATCTGTGTTGCCACGGTTACCGACATGGTGGATAGTCGATTCCTGGTGCACTTTGACAACTGGGATGAAAGTTATGACTACTGGGGGCGGCAGAATCCACACACATCACTGACACTGACTGAGAGAAGTAACAGATGTCTGTCTCACACTCACAGAGAGCTGTCAGATCTCACTCTCACACCCATCATTCGTGATCCTCCACAGAGAGAGAAAAGACTTTCGCCCTTCAGTCTTTCTCTTACACGCACAATCAATACTTGGTTTACACGTGTCCGTCTTGTTCCCATTCATTTTGATGGCTGGACAGATGAATATGATTACTGGATCGATGCAGATAGCCCAGATATTCATCCTGCCGGCTGGTGCGCCAAAACTGGACATCCACTGCAGCCTCCAATCACTCCTCAGGACATGTTTGAGACGTCGGAGCAGGGCGGCTGTCCCACGGCCGGCTGTAAGGGAGTGGCGAGTCATGTGTGTAAATCGACCATGTGTTCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395305 lncRNA downstream 360 948966 ~ 949176 (-) True G347250
TU395304 lncRNA downstream 728 948516 ~ 948808 (-) True G347249
TU395302 lncRNA downstream 16145 933035 ~ 933391 (-) True G347247
TU395297 lncRNA downstream 26227 922926 ~ 923309 (-) True G347244
TU395295 lncRNA downstream 48445 900842 ~ 901091 (-) True G347242
TU395312 lncRNA upstream 9712 978233 ~ 1006286 (-) True G347257
TU395223 lncRNA upstream 39174 1007695 ~ 1017605 (-) True G347177
TU395335 lncRNA upstream 178482 1147003 ~ 1216308 (-) False G347279
TU395351 lncRNA upstream 255279 1223800 ~ 1224018 (-) True G347293
TU395413 lncRNA upstream 336283 1304804 ~ 1305534 (-) True G347348
CI01000135_00935305_00937803.mRNA mRNA downstream 10053 934474 ~ 939483 (-) True CI01000135_00935305_00937803
CI01000135_00909940_00911418.mRNA mRNA downstream 37972 909758 ~ 911564 (-) True CI01000135_00909940_00911418
CI01000135_00881762_00883731.mRNA mRNA downstream 65805 880974 ~ 883731 (-) True CI01000135_00881762_00883731
CI01000135_00791752_00800033.mRNA mRNA downstream 148665 790724 ~ 800871 (-) False CI01000135_00791752_00800033
CI01000135_00707778_00716012.mRNA mRNA downstream 233524 706901 ~ 716012 (-) True CI01000135_00707778_00716012
CI01000135_01036648_01040176.mRNA mRNA upstream 67992 1036513 ~ 1040176 (-) True CI01000135_01036648_01040176
CI01000135_01057682_01067405.mRNA mRNA upstream 88905 1057426 ~ 1067405 (-) True CI01000135_01057682_01067405
CI01000135_01069416_01096641.mRNA mRNA upstream 100642 1069163 ~ 1096689 (-) True CI01000135_01069416_01096641
CI01000135_01130311_01159673.mRNA mRNA upstream 161790 1130311 ~ 1159673 (-) True CI01000135_01130311_01159673
CI01000135_01241553_01250988.mRNA mRNA upstream 273017 1241538 ~ 1251157 (-) True CI01000135_01241553_01250988
TU395205 other downstream 157591 765586 ~ 766737 (-) False G347167
TU395207 other downstream 172752 765586 ~ 776784 (-) False G347167
TU395013 other downstream 453125 198316 ~ 496411 (-) True G347001
TU395336 other upstream 178482 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 363843 1332364 ~ 1366129 (-) True G347296

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034096 False 3251 mRNA 0.51 21 NC_007131.7 2139436 ~ 2206310 (+)