RNA id: CI01000135_00791752_00800033.mRNA


Basic Information

Item Value
RNA id CI01000135_00791752_00800033.mRNA
length 2400
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000135_00791752_00800033
representative False

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 790724 ~ 800871 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTGGAGTTTTTTTTAAAATTGAAATTCTGAGAAGAAAAGTGAATTGTCAGATATTATTTTGTTATTCAGTAACGGGGAAAAAAACAGATAAAAAAATATCAGAATTGCGAGATATAAGCACGCAATTGTAAGAAAAAAATGTCAGAACTGTGGGATAAAAAGACACATTAGGTCTACCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATTCCGTGACGGAAACAAGAGTCCTATAATGTCAGCACAAAATCAAAAGAAAGTTATATTAGCCTATTTTAGGATCGTAAAGATTTTCTTACACATTTTTCCCGCCTCTTGATGATGCACAAAATTTGAATTATGCAGAAGTCCACATGAGATTTACAGCATACACGAAGACTTTGAAATACAGTGCAGGAGTCATACATTTTTGATTGCGTAAAACAGCAGCGTTTGTGACGAGCACAAATATCTCATTTTGTGTTACACCGAAGAAATTGGGGGTTGAAACTACACGAAAGTGAGTAAATAATGACGGAACCTTCAGTTATGTGTAAAGTATTCCTTTTAAAACAATACCGTCACCTTTGTTTTTTGAAACGCTTTTCCCTTAGAGCACCGCGTGTCCCCTCTGACTGCCCGTACCATGTGTGTGGTGTTGTGTTGCAGTAAACACTGTATGATCTGTTTTTAACTCGAAAGCTGATCCTGTAGTGCAGCAAATTCAGAAATACACCTGACGAGGAAAACGATTTAATCGATTAAATCACCTGAGAAATTAACTACATGACTTCCATCTCATAGCCGCTGTCACAAACGATCATCAGACACCCGGACTAGATTGATTGGACATGATCAGTCGCCACTTTCTGCTCGCTAGATCGTTAAAGCGCTTATCAGGGCTGTTTAATGCAGGCGTCCACTCAGAAGTGCTCAAGTGTAGTAAGGTGGAGCTGCGGGTCATATCTCAGTCATATCGCGCTGCTCAGAGCCCGTGTTGTGTGAGTGTGAGGCGGGCAGTAGTGTGTGCTGAGGGTCAGTCGAGCACCATGGAGGACAACAATAACAACTCTGTGTCCACGCAGACCGCCAGTCAACTCAAGGACACTACCAAGGTGTGTGCTGTGAGATGTGTGTACGTGACAGACAGACAGTGCTTCTTCTTTATGTGCAGGACACAGATAGGAGGCGCGTCTGTAATCTTCCCACAGGACAGGCTTCCTGCCGAGGGCGTTAAGAAGCTGGATCCGGCGCTGTTCTCCGACTTCGAGAGCCGTGTGTTTGGAGACGAATGCGTGTGTAGAGTGGACCTGTGCTCCATGCTCAAGAAAAAGACCGCAGATGGATACTACCACCGCGAGAAGAGCGTCACGTTCAGTGAGTAAACCTGCTCTGAAGGTTCATCTTTGTACGTCTGGTTCCTCTGGTATGAGGCAGTGCTTCTGGACTGGACGGGTCACAGGTGTAACTGAGGTTTGGACAGCAGAGTGAACACTCCTCAGCCTTTAAAATTGAGGAGAAACACTGATATAATACCCAGCAGCTGTTCTTTGCATTAACATCGTCGGTTCAGTGAAGCCGGTTGAGAAGCACTGCTGTAGAGCACATCTTCTGGCTTGTGATTTGGGCTCAGGTTTGCAGGTCATTTCCAAACTCTAGGTCTTTTATTTCAGTCTGGTACTGTGTGATGGTTTTAAATAATAATGCCGTATTATATACCACAGTACTGTTTTGTATTGTTACAGTGTTGGTAGTGTATGTAAATGAAGAGAGTTTACTCTTTTTCTGTGTTACCTGGAGCGAGTAATTCACGTTTATTTGTCAGTAAAAGTCTTTTGACAGCTTCAGGGCTTTGGTGAAAAACAGCATTATGGTAAAATGGATCACTATTGACAGAGTTTTGCTTCAGGTGGAACTGAAGGAACGTCCGTTTCTTTCAATCTTTCTCCTCTGTTTGGCCTAAAACACTGTTCGTGCTCATCCAGTTTGAAATGTTGACTACAAACACTGAGGTTTTTCAGATCTTCCATCTCTGTGTTCTCTCCGTAATTATGATTCTTTGAAGTCTTTAGCTGCTGCCTACATCACGCTGGACCTTCACTGAAACTGAAGCTAACTCACTCCCGCTGAATGTTTACTCTGAATTCTTGCTCTCAGTAACAAAACAAGTTAACACCATTATAACTAAAAGTTTGCTAAGAAGTATTACCTGCTAAAGCAAGGCGGTATTTGACTCTTTATCCATAGCAGACTGGTGGGCGTGGCCTTGGACAGCAACATGCCCAGTGCATTATTAATCATACCTTCAAACTAGTCGCTTTTCAGTGAAATTCGCCATTTTGAATCAAAAGATGTCATTTATGTGAATCATGTAGATCCGAAGAGTTTTTTTTACAGGGGGAACTATATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395206 lncRNA downstream 13940 765586 ~ 776784 (-) False G347167
TU395241 lncRNA downstream 66243 724207 ~ 724481 (-) True G347194
TU395240 lncRNA downstream 73566 716804 ~ 717158 (-) True G347193
TU395196 lncRNA downstream 92354 677545 ~ 698370 (-) True G347161
TU395197 lncRNA downstream 104554 685358 ~ 686170 (-) False G347162
TU395250 lncRNA upstream 4408 805279 ~ 877916 (-) True G347198
TU395215 lncRNA upstream 24673 825544 ~ 846398 (-) False G347172
TU395217 lncRNA upstream 24673 825544 ~ 841043 (-) True G347172
TU395272 lncRNA upstream 78851 879722 ~ 879945 (-) True G347219
TU395284 lncRNA upstream 90630 891501 ~ 891784 (-) True G347231
CI01000135_00707778_00716012.mRNA mRNA downstream 74712 706901 ~ 716012 (-) True CI01000135_00707778_00716012
CI01000135_00696281_00705815.mRNA mRNA downstream 84224 696281 ~ 706500 (-) True CI01000135_00696281_00705815
CI01000135_00679808_00684801.mRNA mRNA downstream 105923 679570 ~ 684801 (-) True CI01000135_00679808_00684801
CI01000135_00623693_00630930.mRNA mRNA downstream 159254 623473 ~ 631470 (-) True CI01000135_00623693_00630930
CI01000135_00609374_00620722.mRNA mRNA downstream 170002 609347 ~ 620722 (-) True CI01000135_00609374_00620722
CI01000135_00881762_00883731.mRNA mRNA upstream 80103 880974 ~ 883731 (-) True CI01000135_00881762_00883731
CI01000135_00909940_00911418.mRNA mRNA upstream 108887 909758 ~ 911564 (-) True CI01000135_00909940_00911418
CI01000135_00935305_00937803.mRNA mRNA upstream 133603 934474 ~ 939483 (-) True CI01000135_00935305_00937803
CI01000135_00949536_00968521.mRNA mRNA upstream 148665 949536 ~ 968521 (-) True CI01000135_00949536_00968521
CI01000135_01036648_01040176.mRNA mRNA upstream 235642 1036513 ~ 1040176 (-) True CI01000135_01036648_01040176
TU395207 other downstream 13940 765586 ~ 776784 (-) False G347167
TU395013 other downstream 294313 198316 ~ 496411 (-) True G347001
TU395336 other upstream 346132 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 531493 1332364 ~ 1366129 (-) True G347296

Expression Profile