RNA id: TU395206


Basic Information

Item Value
RNA id TU395206
length 1295
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G347167
representative False

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 765586 ~ 816079 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGACCGAGAGACAGTCACACGCTCACTCGCACCATGACTGGATCGTACCACTCCTGCGCTTGAGGACAGATCAGCCAGAGGAGCGCGGCCGTCATGGGGCAGTTGTGCTGCTTCCCTCTCTCCCGACCACAGGATAAGCTCAGTGTTACGAAAGCGCCGGTGCCGGACGATGAGGAGTTAGTGAGTCTGAGTAAGCGGCTGGTCGAAGACGCCGTGTTGCGGGCCGTGCAGCAGTACATGGAGGAAACCCAACAGAACGGCACCGCGCAAAAAGACGAGGGTCCGCCAGCGTCCAAACTCAACAGCACCAAATGACCCCGCGACCCCTGACCCGTCCCCTGACCCGTCCACGACCTCACCTGCCAGCGGGCGTCAAACCGCAGCAGAGAGGCGTTTGAGTAGAGAGAGCTGAAGTCAGCGAGGAGTGTCGAGTGTGCAGGATCAGGGCCGATGCACACCGGACTCAAACACGTACCCTTCCCTCTCCTACTCCACTCCTGTCTTTTACTGTTCATTTGTGACGGATCCTTCAGAGAGAGCAGCTGAACGAGTGCTCTAGTGTCAATCTCAGTTAACTGCTCAGATCGAGTGTGGACGTGACCTGCAGCCCAATCCAAAGCCAGACACTTGAACTCTGCTCTGCGATATGAACATGTCTGACCTGCTGTCGCTGTCACATGATGACGATGTGTGTGTGTTGTTTGTGCCGTAGGGTGTGTGTGCGCTCAGAGCAGGATGGATTGGGAAAGAGAGCGCAGACGGACACAAGTACAGGCCATAAAGACACTGTTAGCACAAGCAAACATTCAAGCTAAGATCCTGCAGGAGCTGAACCTGTCCGCCGGAGGAAGTCCACACTGACACAACCATCCCAAAGTAAAACACACACACACACACACACACACACTCAGACCTTCACTGACGTACAAACCAGCCAAACATCTCACACACACTCTCTGAAGAGAGGCCGGCCTGATTTTTAGGGGGACATTAAGTTCTACAGGAGTTTGATGTCTACGATGCTTCAGATCAGCACACACTGTGGCCTTAGAGAATCACACCTTCTTCTTATACTGCTGAAGAACATTTTGTTTAGTTCACTGATTCATTTTTTTCACCAGAACCTTAAAATGTGTCTTTTTATGGTCCTTGTCCTCGTATGAGATGTTTCTTGAGTTGCCCGTGTCGATGAAGTGTCGAAGACGGCTTGATTCGTGTAAACTGTACTATGATGTCATCATTTATCTTTTTGTTTCCCATCTGTCACTTTTTTACTCTTAAAAATAAAGGCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395241 lncRNA downstream 41105 724207 ~ 724481 (-) True G347194
TU395240 lncRNA downstream 48428 716804 ~ 717158 (-) True G347193
TU395196 lncRNA downstream 67216 677545 ~ 698370 (-) True G347161
TU395197 lncRNA downstream 79416 685358 ~ 686170 (-) False G347162
TU395199 lncRNA downstream 79416 685358 ~ 686170 (-) True G347162
TU395250 lncRNA upstream 28495 805279 ~ 877916 (-) True G347198
TU395215 lncRNA upstream 48760 825544 ~ 846398 (-) False G347172
TU395217 lncRNA upstream 48760 825544 ~ 841043 (-) True G347172
TU395272 lncRNA upstream 102938 879722 ~ 879945 (-) True G347219
TU395284 lncRNA upstream 114717 891501 ~ 891784 (-) True G347231
CI01000135_00707778_00716012.mRNA mRNA downstream 49574 706901 ~ 716012 (-) True CI01000135_00707778_00716012
CI01000135_00696281_00705815.mRNA mRNA downstream 59086 696281 ~ 706500 (-) True CI01000135_00696281_00705815
CI01000135_00679808_00684801.mRNA mRNA downstream 80785 679570 ~ 684801 (-) True CI01000135_00679808_00684801
CI01000135_00623693_00630930.mRNA mRNA downstream 134116 623473 ~ 631470 (-) True CI01000135_00623693_00630930
CI01000135_00609374_00620722.mRNA mRNA downstream 144864 609347 ~ 620722 (-) True CI01000135_00609374_00620722
CI01000135_00791752_00800033.mRNA mRNA upstream 13940 790724 ~ 800871 (-) False CI01000135_00791752_00800033
CI01000135_00881762_00883731.mRNA mRNA upstream 104190 880974 ~ 883731 (-) True CI01000135_00881762_00883731
CI01000135_00909940_00911418.mRNA mRNA upstream 132974 909758 ~ 911564 (-) True CI01000135_00909940_00911418
CI01000135_00935305_00937803.mRNA mRNA upstream 157690 934474 ~ 939483 (-) True CI01000135_00935305_00937803
CI01000135_00949536_00968521.mRNA mRNA upstream 172752 949536 ~ 968521 (-) True CI01000135_00949536_00968521
TU395013 other downstream 269175 198316 ~ 496411 (-) True G347001
TU395336 other upstream 370219 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 555580 1332364 ~ 1366129 (-) True G347296

Expression Profile