RNA id: CI01000135_00623693_00630930.mRNA


Basic Information

Item Value
RNA id CI01000135_00623693_00630930.mRNA
length 1600
RNA type mRNA
GC content 0.52
exon number 4
gene id CI01000135_00623693_00630930
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 623473 ~ 631470 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATATTTAGGGGCTTTTTTCAAATCCACAAACAATCCAAAACCACCAATGGGCGACTTCACTCGGAGAGAAATGTGAACAGGGTGTTGTGGGTTATGTAGTTGTCATTCCAGGCCTTGACAGGAAACGAGTGTGAGGAAGAATCTTGCTTAAACTACAAGTACCGGCTTCGCCGGAAACCCTCCGCGCATGCGCAGAGAAGCAGCGTCGTCAAATGTTTTGTTTCCACGCCATATTTGTTAGCCGGCTAGCGCTCGCTCAAGAGGCGTCGGACGGGATCTCGGCACAATCCGAAATCATCGGTGCTTTCATGAGGAGTATCGACTCCATAACTACGTTTTTCTGTGCATATACGCGTCTTTGTTTTCTTAGTCAATGTTTTGGCCTGAAGGTCAACGCAGAATTTGAATAAAAGCGAAGCGATTGAGTCGTGTTCCCTTGAGATCAAAGCAGGACAGTGACTAGCAGGGGGGCTCTCGCTGTTCGAGCGGATTATTTCTTTTCGCCGCGTTCTTTTACCAAACACAATCTTTAGATAAAATGGCTTGTGGAGCCACTCTTAAAAGGACTATGGATTTCGATCCTCTGATGAACCCGGCGTCTCCGAAGAGGAGGAGATGTGCGCCCATGTCTCCGTCCAGCTCCAGCGCGTCCCCGCAGAAGTACCTGCGCATGGAGCCGTCGCCCTTCGGCAGAGTGTCTTCAGCCCTCACCACAGAGCAAATCCTGAGCAACATCAAGCAGGAGTACAAGCGCATGCAGAAGAGGAGACATCTGGAGAGCAGCTTCCAGCAGAGCGACTCCGGCTGCGGCCTCGACTCCCAGCCGCACGCCTCCATCAGCAGCAGCACAGCCTCACTGCCAGGCGTCTCCTCTGGATCGGCGTCCCCCTCCAGACGGGAGCAGCCGTTGTTCACGCTGAAGCAGGTGGGAATGATCTGTGAGCGTCTGCTGAAGGAGCGCGAGGAGAAGGTCCGGGAAGAGTACGACGAGATCCTGACAACCAAACTTGCAGAACAGTACGATGCTTTCGTGAAGTTCACCCATGACCAGCTGATGAGGCGGTTTGGAGAGCAGCCTGCCAGCTGTAAGTATCCTCTCGTCTCATTCAGATGCTTGTTCTCGCTCCGTCTGCCTCACATGCTGATCCTGATGTTGTCGTTGTGCAGATGTGTCCTGAGTGGCCGTGCTGTCGGGCGTCCTCGTGTCCTGTGGTTGGTGCCGTGTCCAGTGGATCTCTGCCTGTGTGAGCTCCTGACACTCAGACCGGCTCCGGCTGGATCTCCAGCAGTGCCAATCGCATCTTTTCCCCCGCTGGGCACAGAGTATGTGTCAGGCTTCTGTCAGTGCGTAACCACTCTCTCTCTCTGCAGCAGCTGAGTGCTTCCTGCCGTCGTCAACGCCCATATATGGACCTTTGCAACTATTATTCAAATCAGTGGCTCTTGTGTCTCTCTTACTGAACCCTGGATATTTATTAGGCTTTGACGATGCCTTTTATACAGTCACCTGTCATTTCATCCTCATTTTTTTGTTTGATTTTGTAAAATGCCTTTTATTCATTGCAAATGATGATAAATGTGAGACTGTGTGAAATAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395016 lncRNA downstream 89290 533918 ~ 534183 (-) True CI01000135_00524340_00537589
TU395169 lncRNA downstream 108914 514343 ~ 514559 (-) True G347136
TU395077 lncRNA downstream 400914 222176 ~ 222559 (-) True G347055
TU395015 lncRNA downstream 407289 204402 ~ 208028 (-) True G347003
TU395003 lncRNA downstream 428117 184536 ~ 195356 (-) True G346991
TU395196 lncRNA upstream 46075 677545 ~ 698370 (-) True G347161
TU395197 lncRNA upstream 53888 685358 ~ 686170 (-) False G347162
TU395199 lncRNA upstream 53888 685358 ~ 686170 (-) True G347162
TU395240 lncRNA upstream 85334 716804 ~ 717158 (-) True G347193
TU395241 lncRNA upstream 92737 724207 ~ 724481 (-) True G347194
CI01000135_00609374_00620722.mRNA mRNA downstream 2751 609347 ~ 620722 (-) True CI01000135_00609374_00620722
CI01000135_00578080_00588322.mRNA mRNA downstream 34930 576969 ~ 588543 (-) True CI01000135_00578080_00588322
CI01000135_00524340_00537589.mRNA mRNA downstream 84758 524149 ~ 538715 (-) False CI01000135_00524340_00537589
CI01000135_00501028_00501977.mRNA mRNA downstream 120325 501028 ~ 503148 (-) True CI01000135_00501028_00501977
CI01000135_00433702_00445785.mRNA mRNA downstream 177688 433521 ~ 445785 (-) False CI01000135_00433702_00445785
CI01000135_00679808_00684801.mRNA mRNA upstream 48100 679570 ~ 684801 (-) True CI01000135_00679808_00684801
CI01000135_00696281_00705815.mRNA mRNA upstream 64811 696281 ~ 706500 (-) True CI01000135_00696281_00705815
CI01000135_00707778_00716012.mRNA mRNA upstream 75431 706901 ~ 716012 (-) True CI01000135_00707778_00716012
CI01000135_00791752_00800033.mRNA mRNA upstream 159254 790724 ~ 800871 (-) False CI01000135_00791752_00800033
CI01000135_00881762_00883731.mRNA mRNA upstream 249504 880974 ~ 883731 (-) True CI01000135_00881762_00883731
TU395013 other downstream 127062 198316 ~ 496411 (-) True G347001
TU395205 other upstream 134116 765586 ~ 766737 (-) False G347167
TU395207 other upstream 134116 765586 ~ 776784 (-) False G347167
TU395336 other upstream 515533 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 700894 1332364 ~ 1366129 (-) True G347296

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035233 False 1663 mRNA 0.51 5 NC_007131.7 2715949 ~ 2725930 (-)
bowfin (Amia calva) AMCG00003611 True 1515 mRNA 0.44 4 CM030121.1 11560562 ~ 11568281 (-)