RNA id: TU395016


Basic Information

Item Value
RNA id TU395016
length 266
lncRNA type sense_over
GC content 0.44
exon number 1
gene id CI01000135_00524340_00537589
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 524149 ~ 538715 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGGAGGAATATTTCAGGAAGAGAATCAGTGATGAGCATCAAGCCAGCAGAATCATCTCACACATCAGAAGAGCAAGAAGCCTCCACATCATGTGCCACATACCCGTCTTCTGCTGGATCTCATCCACTGTGCTTCAGAAGCTCCTGAAAGAAGATCTGAGTGCAGAAATCCCTCAAACTCTGACTGAAATGTACATCCACTTCCTGCTGATTCAGATCAACATGAGGAATCAGAAGTATGAAGAGAGAGATCAAGAGAAACTC

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395169 lncRNA downstream 19359 514343 ~ 514559 (-) True G347136
TU395077 lncRNA downstream 311359 222176 ~ 222559 (-) True G347055
TU395015 lncRNA downstream 317734 204402 ~ 208028 (-) True G347003
TU395003 lncRNA downstream 338562 184536 ~ 195356 (-) True G346991
TU395011 lncRNA downstream 352831 174749 ~ 181087 (-) True G346999
TU395196 lncRNA upstream 143362 677545 ~ 698370 (-) True G347161
TU395197 lncRNA upstream 151175 685358 ~ 686170 (-) False G347162
TU395199 lncRNA upstream 151175 685358 ~ 686170 (-) True G347162
TU395240 lncRNA upstream 182621 716804 ~ 717158 (-) True G347193
TU395241 lncRNA upstream 190024 724207 ~ 724481 (-) True G347194
CI01000135_00501028_00501977.mRNA mRNA downstream 30770 501028 ~ 503148 (-) True CI01000135_00501028_00501977
CI01000135_00433702_00445785.mRNA mRNA downstream 88133 433521 ~ 445785 (-) False CI01000135_00433702_00445785
CI01000135_00338395_00339531.mRNA mRNA downstream 194387 338271 ~ 339531 (-) True CI01000135_00338395_00339531
CI01000135_00316936_00333617.mRNA mRNA downstream 199949 316808 ~ 333969 (-) True CI01000135_00316936_00333617
CI01000135_00313634_00313792.mRNA mRNA downstream 220126 313307 ~ 313792 (-) True CI01000135_00313634_00313792
CI01000135_00578080_00588322.mRNA mRNA upstream 42786 576969 ~ 588543 (-) True CI01000135_00578080_00588322
CI01000135_00609374_00620722.mRNA mRNA upstream 75164 609347 ~ 620722 (-) True CI01000135_00609374_00620722
CI01000135_00623693_00630930.mRNA mRNA upstream 89290 623473 ~ 631470 (-) True CI01000135_00623693_00630930
CI01000135_00679808_00684801.mRNA mRNA upstream 145387 679570 ~ 684801 (-) True CI01000135_00679808_00684801
CI01000135_00696281_00705815.mRNA mRNA upstream 162098 696281 ~ 706500 (-) True CI01000135_00696281_00705815
TU395013 other downstream 37507 198316 ~ 496411 (-) True G347001
TU395205 other upstream 231403 765586 ~ 766737 (-) False G347167
TU395207 other upstream 231403 765586 ~ 776784 (-) False G347167
TU395336 other upstream 612820 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 798181 1332364 ~ 1366129 (-) True G347296

Expression Profile