RNA id: CI01000135_00679808_00684801.mRNA


Basic Information

Item Value
RNA id CI01000135_00679808_00684801.mRNA
length 2463
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000135_00679808_00684801
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 679570 ~ 684801 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATTCACAAGATCTGCGGATTGTGTTACTGGGAGTCTCTGGTGTAGGAAAGAGTGCAATGGGAAATGCAATACTGGGTCAAGAGGCTTTTAAAGAGAGCAGAACCAAAGAGAGTGTGATACAGAGAGGAAGAGTAGAAAACAGAAACATCTCCATCATTGACACTCCAGGATTCTCAAACACTGAATTGACTGATGAAGAACTGCAGAAGCAAATGATGAAGAGTCTGGATCTCTCCGATCCTGGTCCTCATGTGTTCCTGCTCATCATCAACCTGGAGAACTTCAAAGAGGATGAAAGGAACATTGTAGAGCAAATTCTGGAGGTCTTTGGAGAAGAAGCTTTGCTGTTCACAATGGTGCTGTTTACTGGAAGAGAAAAGGTCTCCAGAAGAGAATGGATTCAAATCAATGAGAGTGAAGAAACACAAAAAATATTTAAATATTTTGAGGGAAGATATCATGTGATAAACAGCAAAAATGAATGTGATCTCTACCAGATCACAAAGCTCTTGAAGAGCATTGATAAAATGGTGAGGACCAATGAAAAACGGCATTACAGAAAAGTCAGAGAGCAGGAGGAGAGAATGAAACAAGAAATGGTGGGGAAAAGGCTTGAAGAGGGAGACATGCAAGAGCAGAAGAAAGAGATAAATCCAGAGATGGATATTAAATCTTATGAGAGAAAACAAGACGAAGCAACTGTTCTGAAGATTGTTCTGGTGGGTAAAAGTGGAGTGGGAAAAACTGCAACAGCAAACACCATTCAGGGCAAAAATGTGTTCAGATCGAATTGGACCTGCACCTGTGAGAAACAAGACGCAGTGGTGTCTGGAAGAACCATCTCAATCATTGACACTCCAGGACTGTTAGATTTCCAGCAGTTCAGGCACTTTCAACATGAACTCAAGAGTGACATTGAGAAATGCTTAGACATGTCAGCTCCTGGTCCTCTTGTGTTTCTGCTGATCATCAGAGTGAATGAGAGAATCACAGAGGAAGAAAAAAACACAGTGAAATGGATTCAGCAGAACTTTGGAGAAGATGCTGTACATCACACCATCATTCTGTTCACTCATGCTGATTTGCTGAAGGATGAATCTTTGAATGAGTACATCAGAAAAAGCCCTGATTTGGATTCACTGGTTCACAGTTGTGGTGGCAGATTTCACTCATTCAACAATCAAGACAGAAACAATCAAAATCAGGTCATAGAGCTTCTGGAGAAGATTGAACAACTGATTAAAAACAATGGAGGAGAACATGATGCCAATGAGAACAAACTCAGAGAGCAGAGCCAGAAGCAAAAAGATACAAGACAATCTTTTCCTGTATCCACATCTCCTCAAGAGATGCGAGAGCAAGAAATAGGAATAAATCAAGACGAGGACATAAATACACAAAGCAAAGAAGAGAGGAACACAAAGACGGAGATGGTCTTACACGAACTTCAAAGAGATACAGATGATCTCATGAGACTCATGATGGGCCTCGAGCTAAGTGAGATGGCTCTGAGTTTGTCATTAGAAACAATAATCATACCAAGCATTCTGTCAAGACAAGATCTAACAGATCTGAGGATTGTACTGCTGGGTTCACTGGGATCAGGAAAGAGTTCAGCAGGAAACACCATCCTGGGGAAAAATGCTTTCAGAGCAAGTCCTGTGTTATCCACTACAAACAGTGAGAAACAAGCAACAGTGGCATCTGGAAGAACCATCTCAATAATAGACACTCCAGCCATAACATTAGATTTCTTCCACTTCGTTCATCTGTCTAAAATTGAGAAAAGCTTAGAAATGTCTGCTCCTGGTCCTCATGTGTTTCTACTAGTCATCAGAGTGAGGAACTTCACAGAGGAAGAGAAGAACATAATGAAATGGCTTCAGCAGAACCTTGAAAGAGATGTTTTTAATCACACAATCGTTCTTTTCACTCATACTGATCTGCTGAATTTCCTGATAAAAGATCCTTTGAAAGAGTTGATCAGAATACACAATGATCTACAATCACTGATTGAGAGCAGCGGTGGCAGATTTCACTCATTCAATAATAGGGCAATGTGGAACCGATTTCAAGCCATAGAACTTCTAAGGAAGATTGTTGAAATGGTGCAGAGAAATGAAGGGAAGTACTACACCAGAAACAACATCTTTAAAAGAGCCCAGAAAACAAAACAGTTAGTATATGCAAAAAAACAAGACACAGATTGTGAAATACTATAAAACCCACAGACCTGTAGTATTTCCTCGGTCATCTGGATGTGGGTGTTACAATGCTTCTGCATGTTGTATAATTATGATGTCATGTATATAATTAAGGGAAATTATTAATTAAGAGAGAATCATACAGTGGTAATTCTGAGCATAGGACGGATGGGATGGCGACTATTATGTTACCCACAAAGTTGGCAAAAGCTTTCATGCAATGAGAAATTTAGCTTTTGTTAAATGCCAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395016 lncRNA downstream 145387 533918 ~ 534183 (-) True CI01000135_00524340_00537589
TU395169 lncRNA downstream 165011 514343 ~ 514559 (-) True G347136
TU395077 lncRNA downstream 457011 222176 ~ 222559 (-) True G347055
TU395015 lncRNA downstream 463386 204402 ~ 208028 (-) True G347003
TU395003 lncRNA downstream 484214 184536 ~ 195356 (-) True G346991
TU395197 lncRNA upstream 557 685358 ~ 686170 (-) False G347162
TU395199 lncRNA upstream 557 685358 ~ 686170 (-) True G347162
TU395240 lncRNA upstream 32003 716804 ~ 717158 (-) True G347193
TU395241 lncRNA upstream 39406 724207 ~ 724481 (-) True G347194
TU395206 lncRNA upstream 80785 765586 ~ 776784 (-) False G347167
CI01000135_00623693_00630930.mRNA mRNA downstream 48100 623473 ~ 631470 (-) True CI01000135_00623693_00630930
CI01000135_00609374_00620722.mRNA mRNA downstream 58848 609347 ~ 620722 (-) True CI01000135_00609374_00620722
CI01000135_00578080_00588322.mRNA mRNA downstream 91027 576969 ~ 588543 (-) True CI01000135_00578080_00588322
CI01000135_00524340_00537589.mRNA mRNA downstream 140855 524149 ~ 538715 (-) False CI01000135_00524340_00537589
CI01000135_00501028_00501977.mRNA mRNA downstream 176422 501028 ~ 503148 (-) True CI01000135_00501028_00501977
CI01000135_00696281_00705815.mRNA mRNA upstream 11480 696281 ~ 706500 (-) True CI01000135_00696281_00705815
CI01000135_00707778_00716012.mRNA mRNA upstream 22100 706901 ~ 716012 (-) True CI01000135_00707778_00716012
CI01000135_00791752_00800033.mRNA mRNA upstream 105923 790724 ~ 800871 (-) False CI01000135_00791752_00800033
CI01000135_00881762_00883731.mRNA mRNA upstream 196173 880974 ~ 883731 (-) True CI01000135_00881762_00883731
CI01000135_00909940_00911418.mRNA mRNA upstream 224957 909758 ~ 911564 (-) True CI01000135_00909940_00911418
TU395013 other downstream 183159 198316 ~ 496411 (-) True G347001
TU395205 other upstream 80785 765586 ~ 766737 (-) False G347167
TU395207 other upstream 80785 765586 ~ 776784 (-) False G347167
TU395336 other upstream 462202 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 647563 1332364 ~ 1366129 (-) True G347296

Expression Profile