RNA id: TU395241


Basic Information

Item Value
RNA id TU395241
length 275
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G347194
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 724207 ~ 724481 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAGGTGAGTGTCGCACCTGAAGCCGATCTGGTTGATGTGGTCCGTCTCCAGCAGCATCTTCCACAGCAGACACAGGAAGAGGGGCGGCGAGCCCTGCATGGAGAAGTGTGTGATGATGTCATTCTCATTGGTCATAGATTTCCACTTCCTGTACTCCTCCTCCACGTTCTTCTTCAGGTTAAAGCGGCTCTCCTGAGGAACATTATTCTGCTTGAAGAAGGCCTGGAAGATGAACACGAGAGGGAAGAGAAGTTATTATTAGTCGGATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395240 lncRNA downstream 7049 716804 ~ 717158 (-) True G347193
TU395196 lncRNA downstream 25837 677545 ~ 698370 (-) True G347161
TU395197 lncRNA downstream 38037 685358 ~ 686170 (-) False G347162
TU395199 lncRNA downstream 38037 685358 ~ 686170 (-) True G347162
TU395016 lncRNA downstream 190024 533918 ~ 534183 (-) True CI01000135_00524340_00537589
TU395206 lncRNA upstream 41105 765586 ~ 776784 (-) False G347167
TU395209 lncRNA upstream 41105 765586 ~ 766167 (-) True G347167
TU395208 lncRNA upstream 42859 767340 ~ 816079 (-) True G347167
TU395250 lncRNA upstream 80798 805279 ~ 877916 (-) True G347198
TU395215 lncRNA upstream 101063 825544 ~ 846398 (-) False G347172
CI01000135_00707778_00716012.mRNA mRNA downstream 8195 706901 ~ 716012 (-) True CI01000135_00707778_00716012
CI01000135_00696281_00705815.mRNA mRNA downstream 17707 696281 ~ 706500 (-) True CI01000135_00696281_00705815
CI01000135_00679808_00684801.mRNA mRNA downstream 39406 679570 ~ 684801 (-) True CI01000135_00679808_00684801
CI01000135_00623693_00630930.mRNA mRNA downstream 92737 623473 ~ 631470 (-) True CI01000135_00623693_00630930
CI01000135_00609374_00620722.mRNA mRNA downstream 103485 609347 ~ 620722 (-) True CI01000135_00609374_00620722
CI01000135_00791752_00800033.mRNA mRNA upstream 66243 790724 ~ 800871 (-) False CI01000135_00791752_00800033
CI01000135_00881762_00883731.mRNA mRNA upstream 156493 880974 ~ 883731 (-) True CI01000135_00881762_00883731
CI01000135_00909940_00911418.mRNA mRNA upstream 185277 909758 ~ 911564 (-) True CI01000135_00909940_00911418
CI01000135_00935305_00937803.mRNA mRNA upstream 209993 934474 ~ 939483 (-) True CI01000135_00935305_00937803
CI01000135_00949536_00968521.mRNA mRNA upstream 225055 949536 ~ 968521 (-) True CI01000135_00949536_00968521
TU395013 other downstream 227796 198316 ~ 496411 (-) True G347001
TU395205 other upstream 41105 765586 ~ 766737 (-) False G347167
TU395207 other upstream 41105 765586 ~ 776784 (-) False G347167
TU395336 other upstream 422522 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 607883 1332364 ~ 1366129 (-) True G347296

Expression Profile