RNA id: TU395250


Basic Information

Item Value
RNA id TU395250
length 392
lncRNA type read_through
GC content 0.47
exon number 2
gene id G347198
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 805279 ~ 877916 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCCCTCTAAATCATCACGGGTTTCAGCTTTACCTCAAAGTCCGGCTCCAGAGACGGCCGCGGTCAGACGGAGCTGATGTATTCTCCAACAGCGTTCCTAAACGAGGTCCCGGGATGGTATATGTGGACGGGGATCTTCTTACCTGTGACGGCACTCCTGCTGCTGTTCATCGCTTACCTCAGCTGGAGGATCCGCAAGAAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGTCATGCCGTCATTTTACACCGGACTGCTTCACAAACGAGGGTCAATTCAACACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTTCATTCTAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395209 lncRNA downstream 13334 765586 ~ 766167 (-) True G347167
TU395206 lncRNA downstream 28495 765586 ~ 776784 (-) False G347167
TU395241 lncRNA downstream 80798 724207 ~ 724481 (-) True G347194
TU395240 lncRNA downstream 88121 716804 ~ 717158 (-) True G347193
TU395196 lncRNA downstream 106909 677545 ~ 698370 (-) True G347161
TU395272 lncRNA upstream 1806 879722 ~ 879945 (-) True G347219
TU395284 lncRNA upstream 13585 891501 ~ 891784 (-) True G347231
TU395288 lncRNA upstream 16492 894408 ~ 894615 (-) True G347235
TU395295 lncRNA upstream 22926 900842 ~ 901091 (-) True G347242
TU395297 lncRNA upstream 45010 922926 ~ 923309 (-) True G347244
CI01000135_00791752_00800033.mRNA mRNA downstream 4408 790724 ~ 800871 (-) False CI01000135_00791752_00800033
CI01000135_00707778_00716012.mRNA mRNA downstream 89267 706901 ~ 716012 (-) True CI01000135_00707778_00716012
CI01000135_00696281_00705815.mRNA mRNA downstream 98779 696281 ~ 706500 (-) True CI01000135_00696281_00705815
CI01000135_00679808_00684801.mRNA mRNA downstream 120478 679570 ~ 684801 (-) True CI01000135_00679808_00684801
CI01000135_00623693_00630930.mRNA mRNA downstream 173809 623473 ~ 631470 (-) True CI01000135_00623693_00630930
CI01000135_00881762_00883731.mRNA mRNA upstream 3058 880974 ~ 883731 (-) True CI01000135_00881762_00883731
CI01000135_00909940_00911418.mRNA mRNA upstream 31842 909758 ~ 911564 (-) True CI01000135_00909940_00911418
CI01000135_00935305_00937803.mRNA mRNA upstream 56558 934474 ~ 939483 (-) True CI01000135_00935305_00937803
CI01000135_00949536_00968521.mRNA mRNA upstream 71620 949536 ~ 968521 (-) True CI01000135_00949536_00968521
CI01000135_01036648_01040176.mRNA mRNA upstream 158597 1036513 ~ 1040176 (-) True CI01000135_01036648_01040176
TU395205 other downstream 13334 765586 ~ 766737 (-) False G347167
TU395207 other downstream 28495 765586 ~ 776784 (-) False G347167
TU395013 other downstream 308868 198316 ~ 496411 (-) True G347001
TU395336 other upstream 269087 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 454448 1332364 ~ 1366129 (-) True G347296

Expression Profile