RNA id: CI01000135_01036648_01040176.mRNA


Basic Information

Item Value
RNA id CI01000135_01036648_01040176.mRNA
length 1260
RNA type mRNA
GC content 0.53
exon number 7
gene id CI01000135_01036648_01040176
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 1036513 ~ 1040176 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTCGTGCGCAGCAGGGGCGGAGCCTGTTGTCCTGGAACTGGCCAAACAGTTTGGTCTGTCCAGAAACAGTCACATGGCCTTCGAGTTTGATGACAGAAAGGTGAAGAACAGGCTGATCATCGAGTTCGAGATGCGCACCGGAGCAGACTCTGGGCTGGTGTTCTACATGGCCAGAATAAACCACGCCGACTTCGCCACCATCCAGCTGAAGGAGGGAATGGCTCACCTGAGCTTCGATCTGGGCAGCGGAAACACCTCCGTCAGCGTGCCGCGCATCATCAACGACGGGCAGTGGCACAAGATCCGTGTGATGAGAGAGAAGCAGAGAGGGATTCTCACGATCGACAACCGCTACTCCAAACACACCACCAGCCCGAAGAAAGCTGATATTCTGGATGTGGTGGGGATGTTGTATGTGGGTGGTTTACCACTCAACTACACCACCAAACGCATCGGACCCGTGTTGTACAGTATTGATGCTTGCATTAAGAACTTCAAGATGATGAATCTGCCCTTGGACATGGAGAAACCCACGTCCAGCTATCGCGTGGGCTCCTGTTTCGCCAACCCAGAGAAAGGAACTTATTTTGATGGCACGGGTTACGCCAAAGCTGTGGACTCGTATCGAGTGGGAAATGACGTGTCTGTGGATCTGGAGTTCAGGACGGCACAGAGCAGCGGCGTTCTGTTAGGCGTCAGCAGCCAGAAGATGGACGGACTGGGCATCGAACTCGCCAATGGAAAGCTTTTGTTCCATGCTGATAATGGAGTGGGACGCGTCACAGCCGTGTACGAGCCCGGGCAGGAGGCGGGGCTTTGTGACGGACAGTGGCACTCTGTCTCCGCCCACAAGCTGAAGCACCGCCTGGAGCTCATCGTGGACGGCAGGAAGTCCGAGGCAGCGAGTCCAGATGTGCGCTCTGCCTCCGCCGATACCAATGACCCTGTGTATGTGGGCGGATACCCTGAGGGTCTGAAGCAGTTCGGACTCACTATAAACACACCGTTTAAAGGCTGCATGAGGAACCTGAAGATCACTAAAGCTGGGAAAACTCTGGAGGTTCAGATGAACAAAGTCCAGGAGCTCAGAGGAGTTCAACCGCTCACCTGCCCTGCTAGTTAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCTCCTCTAACCAAATACAGCTGAATAACACAAGGAATATAAAAAAATAAA

Function

GO:

id name namespace
GO:0016203 muscle attachment biological_process

KEGG:

id description
K05637 LAMA1_2; laminin, alpha 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395223 lncRNA downstream 18908 1007695 ~ 1017605 (-) True G347177
TU395312 lncRNA downstream 30227 978233 ~ 1006286 (-) True G347257
TU395305 lncRNA downstream 87337 948966 ~ 949176 (-) True G347250
TU395304 lncRNA downstream 87705 948516 ~ 948808 (-) True G347249
TU395302 lncRNA downstream 103122 933035 ~ 933391 (-) True G347247
TU395335 lncRNA upstream 106827 1147003 ~ 1216308 (-) False G347279
TU395351 lncRNA upstream 183624 1223800 ~ 1224018 (-) True G347293
TU395413 lncRNA upstream 264628 1304804 ~ 1305534 (-) True G347348
TU395456 lncRNA upstream 333119 1373295 ~ 1375456 (-) True G347390
TU395477 lncRNA upstream 387587 1427763 ~ 1428079 (-) True G347410
CI01000135_00949536_00968521.mRNA mRNA downstream 67992 949536 ~ 968521 (-) True CI01000135_00949536_00968521
CI01000135_00935305_00937803.mRNA mRNA downstream 97030 934474 ~ 939483 (-) True CI01000135_00935305_00937803
CI01000135_00909940_00911418.mRNA mRNA downstream 124949 909758 ~ 911564 (-) True CI01000135_00909940_00911418
CI01000135_00881762_00883731.mRNA mRNA downstream 152782 880974 ~ 883731 (-) True CI01000135_00881762_00883731
CI01000135_00791752_00800033.mRNA mRNA downstream 235642 790724 ~ 800871 (-) False CI01000135_00791752_00800033
CI01000135_01057682_01067405.mRNA mRNA upstream 17250 1057426 ~ 1067405 (-) True CI01000135_01057682_01067405
CI01000135_01069416_01096641.mRNA mRNA upstream 28987 1069163 ~ 1096689 (-) True CI01000135_01069416_01096641
CI01000135_01130311_01159673.mRNA mRNA upstream 90135 1130311 ~ 1159673 (-) True CI01000135_01130311_01159673
CI01000135_01241553_01250988.mRNA mRNA upstream 201362 1241538 ~ 1251157 (-) True CI01000135_01241553_01250988
CI01000135_01402249_01402515.mRNA mRNA upstream 361958 1402134 ~ 1402515 (-) True CI01000135_01402249_01402515
TU395205 other downstream 244568 765586 ~ 766737 (-) False G347167
TU395207 other downstream 259729 765586 ~ 776784 (-) False G347167
TU395013 other downstream 540102 198316 ~ 496411 (-) True G347001
TU395336 other upstream 106827 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 292188 1332364 ~ 1366129 (-) True G347296

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034092 True 2706 mRNA 0.55 20 NC_007131.7 1996202 ~ 2035120 (+)