RNA id: TU395304


Basic Information

Item Value
RNA id TU395304
length 293
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G347249
representative True

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 948516 ~ 948808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAAGTTGCTAACCATGTCAGAGATGGAAACTCGAGTCTGGAAACTTCAACTTGAGTCACACTTAGAGGCTGGAATACAGCACACAACTTTTACATTTATGTAAACATAACATGAACAAACAATGAACAACTGTATTTTCATTAACTAACGTTAACAAAGGTTAGTAAATACAGTAACAAATGTATTTCTCATGGTTAGTTCATGTTAGTTAATACATTAACTAATGTTTAACTAATGAACCTTATTGTAAAGTGTTACCACAGTTTATGTTCATTGTCATGTTTAGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395302 lncRNA downstream 15125 933035 ~ 933391 (-) True G347247
TU395297 lncRNA downstream 25207 922926 ~ 923309 (-) True G347244
TU395295 lncRNA downstream 47425 900842 ~ 901091 (-) True G347242
TU395288 lncRNA downstream 53901 894408 ~ 894615 (-) True G347235
TU395284 lncRNA downstream 56732 891501 ~ 891784 (-) True G347231
TU395305 lncRNA upstream 158 948966 ~ 949176 (-) True G347250
TU395312 lncRNA upstream 29425 978233 ~ 1006286 (-) True G347257
TU395223 lncRNA upstream 58887 1007695 ~ 1017605 (-) True G347177
TU395335 lncRNA upstream 198195 1147003 ~ 1216308 (-) False G347279
TU395351 lncRNA upstream 274992 1223800 ~ 1224018 (-) True G347293
CI01000135_00935305_00937803.mRNA mRNA downstream 9033 934474 ~ 939483 (-) True CI01000135_00935305_00937803
CI01000135_00909940_00911418.mRNA mRNA downstream 36952 909758 ~ 911564 (-) True CI01000135_00909940_00911418
CI01000135_00881762_00883731.mRNA mRNA downstream 64785 880974 ~ 883731 (-) True CI01000135_00881762_00883731
CI01000135_00791752_00800033.mRNA mRNA downstream 147645 790724 ~ 800871 (-) False CI01000135_00791752_00800033
CI01000135_00707778_00716012.mRNA mRNA downstream 232504 706901 ~ 716012 (-) True CI01000135_00707778_00716012
CI01000135_00949536_00968521.mRNA mRNA upstream 728 949536 ~ 968521 (-) True CI01000135_00949536_00968521
CI01000135_01036648_01040176.mRNA mRNA upstream 87705 1036513 ~ 1040176 (-) True CI01000135_01036648_01040176
CI01000135_01057682_01067405.mRNA mRNA upstream 108618 1057426 ~ 1067405 (-) True CI01000135_01057682_01067405
CI01000135_01069416_01096641.mRNA mRNA upstream 120355 1069163 ~ 1096689 (-) True CI01000135_01069416_01096641
CI01000135_01130311_01159673.mRNA mRNA upstream 181503 1130311 ~ 1159673 (-) True CI01000135_01130311_01159673
TU395205 other downstream 156571 765586 ~ 766737 (-) False G347167
TU395207 other downstream 171732 765586 ~ 776784 (-) False G347167
TU395013 other downstream 452105 198316 ~ 496411 (-) True G347001
TU395336 other upstream 198195 1147003 ~ 1216826 (-) True G347279
TU395359 other upstream 383556 1332364 ~ 1366129 (-) True G347296

Expression Profile