RNA id: TCONS_00018568


Basic Information

Item Value
RNA id TCONS_00018568
length 2415
lncRNA type lincRNA
GC content 0.35
exon number 4
gene id XLOC_009458
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 38948423 ~ 38952429 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAATAGtcccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagttgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaatggttgaaaaacagcctgcacatgacaaggcttcaacgttgaaatgtggttgaaaatatgtcagttgttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacatttttttatcatgatctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatTGGAGGACTCCGCGCACGCGGCCACGCGCagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcCGAGacatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgagggcatcaagaacacgcagatggcctaaacctgtgtcagcctggacagactgcagttctgctactccacgccaaggcttttgtatggatgtcttgactactactgtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtatggtgttctctaaaggtgtaactggagcaaaacaacagcacccgttacagtgaaatttgtgttcataaaagatagTGATATATCAGGTATAgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtGTGTGCATACTACTCGTAGTAAACACACACGCTGATCTGATGGGGGAGAGATATAcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaaGTCTCTGGGGTgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataataatggaataacaaattgcttttactgttgtgtttgtgagagagaatcaaaccatatattttacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatttactttatacaaaaaaataaataaataaataaatatttagcatgcagacctgcaaagtgaagcagtaatgtcaggtttagattatagcatgagttttcactattgtgaaagtgaagccattcatttacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaagtgctagactgatatagatgttttagtgttttacacttgattttttgtccccagtgccatcttttacctcaagtgtttctctcaacctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatgttttttattttatttttttactgcagccactttaaaaGTGGGTATTTTGTAAACAGAATTGTATTTTGGAGACTGTGATGGTTGAagcgtagtttagttacttagtttaatttagttagtatctgtctttctgaagacggtaacactttacaataaggttgtattagtaagtgttaatgtatttactaacatgaacaaagagcaatgaagcatctttcatataaagaaagtacagttcatgtcagctcagtgcattaatgttaacaagcatacattttgattttaatagcatcgggacatatttcaattaattaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgccttttttctgtatttgagtgtacagcatgtatagtaacctgcatggttttaatgaactatgtatgctgtaaatgttgctgtatatttagaataaatgaaatgaggtgtgtattaaataaattgatacacagactaa

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000148329

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018842 lncRNA downstream 38152 38901933 ~ 38910271 (-) True XLOC_009457
TCONS_00019221 lncRNA downstream 397619 38547827 ~ 38550804 (-) True XLOC_009456
TCONS_00018841 lncRNA downstream 522578 38425548 ~ 38425845 (-) True XLOC_009455
TCONS_00019220 lncRNA downstream 650689 38296157 ~ 38297734 (-) True XLOC_009453
TCONS_00018552 lncRNA downstream 1067536 37876716 ~ 37880887 (-) True XLOC_009444
TCONS_00019222 lncRNA upstream 811041 39763470 ~ 39820412 (-) False XLOC_009459
TCONS_00019223 lncRNA upstream 895062 39847491 ~ 39848569 (-) False XLOC_009460
TCONS_00018579 lncRNA upstream 895066 39847495 ~ 39848780 (-) False XLOC_009460
TCONS_00019224 lncRNA upstream 1050435 40002864 ~ 40006262 (-) False XLOC_009464
TCONS_00019226 lncRNA upstream 1050435 40002864 ~ 40006263 (-) False XLOC_009464
TCONS_00018567 mRNA downstream 586636 38339386 ~ 38361787 (-) True XLOC_009454
TCONS_00018565 mRNA downstream 730103 38201964 ~ 38218320 (-) False XLOC_009452
TCONS_00018566 mRNA downstream 745793 38201991 ~ 38202630 (-) True XLOC_009452
TCONS_00018563 mRNA downstream 755040 38179904 ~ 38193383 (-) False XLOC_009451
TCONS_00018576 mRNA upstream 324670 39277099 ~ 39820491 (-) False XLOC_009459
TCONS_00018577 mRNA upstream 677401 39629830 ~ 39819877 (-) False XLOC_009459
TCONS_00018578 mRNA upstream 811221 39763650 ~ 39819877 (-) True XLOC_009459
TCONS_00018580 mRNA upstream 895066 39847495 ~ 39848822 (-) True XLOC_009460
TCONS_00018581 mRNA upstream 981866 39934295 ~ 39945036 (-) False XLOC_009461
TCONS_00018535 other downstream 1219257 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 2074057 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 2415176 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 3736186 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 3835637 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018590 other upstream 1116582 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 2440972 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 2576831 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 3325244 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 3576361 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

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