RNA id: TCONS_00018581


Basic Information

Item Value
RNA id TCONS_00018581
length 3485
RNA type mRNA
GC content 0.39
exon number 14
gene id XLOC_009461
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 39934295 ~ 39955785 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctattaaagtcatgcaaaattatattcaagctaaaataattttaatattatgttattattttaacatattatttgaatattataatattatagaaTATAATAGAAGCACAACATCAgcctgtttttcctttttttgtatgTCATGaggatgttttatattttattactttactataaaaaacttttaataaatactttcttatatttttagtatttttaaaatctttttagtCAGTGTAAGTCAGCGAATTTGACATATGGTTTAAAGTGGAAACCCTGTATACAACAAAAAACCTGGCAAATGAACTGACATAGAGCTGTCTTTGGTGTAGATGCTGCTGCATAAAATGTCCCTCTGTAACCCGAAGGTCGCAGTTTGGCAAAGTCTATACAAGACTGTGTACAGTGCAGTGTGCATTCGAGACACCATTCGCTCCCTGCCACAATCCATCCAGCTTTTCAGAGAAATCAGCGAAAACTTCACTGATGATCTTTTCTACATCGCCACATACATCAGTAAAGTGGTGGACTTTGAGGGAAGCATATCTGAGAATCGATTCACTGTCCGGCCGAATGTCGACCCTGTTATTGACGAGAAGAAAAGAAGGATGATGGGTCTGCCAGATTTCCTGACGGACGTGGCTCGTGCTGAGCTGGAAAACCTGGATCCTCGTTTCTCCACCTGCAGTGTCATCTACATGCCTCTGATTGGATTTTTACTGACTGTGCCAAGATTGCCCAGTATGCTGGATAAACAGAGCTTTGAGATTGCTGGTCTTGATTTCATTTTTCTGTCAAAGGACCAACTGCATTATCGCAGCACTCGGACCAAAGAGCTGGACAGCATGCTGGGAGACCTGCATTGTGACATCCTAGATTTGGAGATGGCGGTAATGAGGAAACTTCAGGCCTCAGTGCTTCAGCGGAGTGACTGTATGTATAAGGTCATGTCTCTGTGTGCAGAGCTGGACTGTCTCATTGCTCTTGCTCAGGCCTCTCGTGAACATGGCTACTGCTGTCCAATACTGACAACAGAGCACAGACTGGCCCTGATCGAGTCTCGACATCCTTTGTTGGAGTTGTGCACTTCAGTATTTGTGTCAAACACCTACATCAGCTCTGAAACGGAAGGCAAAGTGAAAGTTATTACGGGGCCAAATTCCTCCGGAAAGAGCATCTTTCTGAAACAGGTGGGTTTGATTGTGTTTATGGCACTGATCGGCTCAAATGTACCTGCTAAAGAGGCAGAGATTGGACTGGTTGATGGTATCTTCACCCGCATGCATAGTCGTGAGTCTATATCAGTGGGTCTGAGCACCTTCATGATTGACGTGAACCAGATGGCTCATTCATTGAATCACAGCACTGAGAACTCCCTTGTTCTGGTGGATGAATTTGGCAAAGGAACCAACACTGTGGATGGGTTGTCCCTCCTGGTCTCATGTCTCAGTCACTGGTTGCGTCGTGGGCTGCAGTGTCCTCATTTGCTTATGTCCACATGCTTCCACAGCCTCATCCAGCTGGGATTGATCCCTGATTCCTCGCTCCTGGCTCTACTGacTCTAGAGACTGCAATAGAGGGAGACGAGCTGGTGTTTTTGTACCAGGTGAAAAATGGCATCTGTCAGTCCAGTTGTGCAGCTAATATCGCCACTCTGGCCGGCATTCCTGATGATCTGGTCAGGAGAGGAGTAGAGGTATCAGATTTATACAGAACAGGAAGAACCATCAGAAAGATGGAGAGGCCATCTGCGGATGAACAGAACAACAGGTGTGCTGAGATTGTGGAGAAATTCCTCAGCATTGATCTAGATGACCCTGAGCTGGATCCAGATTTACTTTTGAAAGACCAGATGCTTCCTGCTCTTGAAGAGGTGTTGTGATTTGTCCGAGATTTGACTCTGGGTACACTTGGTGAAgcaaaatacttaattttattcCAGGGTTGATATTCAAGAACACATCATATTACAGCTGACGTTTTGGATGATATCATATTTGTTATTGTCTTCCAAATTGGAATAGTTTCAATATATTTGAATGATATTAAATTGGAGCAGtgcggtttaaaaaaaaaaatctactcattTCCATGAAATTGGCATTgatttatgttttgaatgattacATAGAGCAGTTAGAATGTACTAGACATATAATACTAGATATAGTAGTTAGAATGCCTACAGTTTTTAATCGTTTTGtgatttaataaatgaatcagtTCTCAGTTCTCtagtttgtttttgattttgaTGAACTGATTGTGCTGTAAGTTTATTTTTGCAGCTAGTGTAGCCAGTGATATAGAACGAAAGGTTGTCTTAGCATTACTTTACGGTAAACAGACTTTATCTCACCACCTTTTCACAGGAGTGCTGCCACTGAATGGCGGTGCAGAAAACACAGCAATTATTAACTCTCTAGGGGGCTGACTTGATTTCAGAGGACCGTTAATGAGTTTCTTCAAGTAATTACTTGTCACAACATTAGAAGGAAGCAACAACTTGCTCGGAGTTTATCAAATCAATTAAGTTCTCGAGCCATCTGTTGCAAGAgaatcaaaaaaaagaaaaaaaaaaagatctgcttTGGTTGAATTACCTTCCCTGTGAGAAATTCAGAGCAGATCCAGAACGCCCACCACAAGCACCTTAAATAGCATCCACATCATTTATTGCAGAATCAAAAGCAGAGTAAGGTGAAGTAGGGTCACTAAAATAGTATTGTATCATATACTATCCGAGTATTTACTTACATTTGAAATTgccttttgttttttacattttcagttttcattttaatttgttttatgatgttctttctttttgttttacttcTAAATAGCTTGTATTTTACAACTTGAACCTGTGAGCCAAAAGCATtgtgggttttgttttgttttagaagTTGGCTTAGAATTGCTGAAGTTTGTTTACTAAAGATCTGTGATTATAATTGTTCCAACAAATGTACAAAATCAATTAGACCATCAGATTTGGCTACAAAAGATGTGTGAGATCCAGACTGCTGTGTCTCTCACTTTTCACAATATTTGATGCTTTGCATAATAATTCAAGCCATCTATTCAGCTTTCTATAGTTCGTCCAATTAAGCTTATAGTGGTGCTATTGTGTCATGAAATGCATCTACATCCACAAGTAATAGTTGTTCTGGCAGAACAAATGAATTTACTCACCACTAATGTGTTTGTTTGCTGTGGAAAAGAAACAATTGATTGAGACTGTAATGATGTTTTTAGAGAGATGCTTCAGTTTTTCTCTACTAAGTGCTGTTGTTTTGCTATAATTGCAAAGCATATGCATGGGAGAAGTCAGCAAATCGCCAtgaatttaaaaaactaaacacatCAGTAAAGATGTATCACATCTTGAGCATCAGTTTATTAGACACTCAGATGTATGTGACTTAAAACAATACCAAGACTAATGtctattataaaaataaagcaagaaatatggctg

Function

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0000710 meiotic mismatch repair biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-131127-632 Predicted to enable ATPase, acting on DNA. Predicted to be involved in meiotic mismatch repair and reciprocal meiotic recombination. Predicted to act upstream of or within mismatch repair. Predicted to be active in nuclear chromosome. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma and primary ovarian insufficiency 13. Orthologous to human MSH5 (mutS homolog 5).

Ensembl:

ensembl_id ENSDART00000192481

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018579 lncRNA downstream 85515 39847495 ~ 39848780 (-) False XLOC_009460
TCONS_00019223 lncRNA downstream 85726 39847491 ~ 39848569 (-) False XLOC_009460
TCONS_00019222 lncRNA downstream 113883 39763470 ~ 39820412 (-) False XLOC_009459
TCONS_00018568 lncRNA downstream 981866 38948423 ~ 38952429 (-) False XLOC_009458
TCONS_00018571 lncRNA downstream 981873 38948423 ~ 38952422 (-) False XLOC_009458
TCONS_00019224 lncRNA upstream 57828 40002864 ~ 40006262 (-) False XLOC_009464
TCONS_00019226 lncRNA upstream 57828 40002864 ~ 40006263 (-) False XLOC_009464
TCONS_00019225 lncRNA upstream 57828 40002864 ~ 40006263 (-) False XLOC_009464
TCONS_00019227 lncRNA upstream 57828 40002864 ~ 40006264 (-) False XLOC_009464
TCONS_00019228 lncRNA upstream 57828 40002864 ~ 40006538 (-) True XLOC_009464
TCONS_00018580 mRNA downstream 85473 39847495 ~ 39848822 (-) True XLOC_009460
TCONS_00018576 mRNA downstream 113804 39277099 ~ 39820491 (-) False XLOC_009459
TCONS_00018577 mRNA downstream 114418 39629830 ~ 39819877 (-) False XLOC_009459
TCONS_00018578 mRNA downstream 114418 39763650 ~ 39819877 (-) True XLOC_009459
TCONS_00018567 mRNA downstream 1572508 38339386 ~ 38361787 (-) True XLOC_009454
TCONS_00018584 mRNA upstream 12773 39957809 ~ 39963009 (-) True XLOC_009462
TCONS_00018585 mRNA upstream 19907 39964943 ~ 39971756 (-) False XLOC_009463
TCONS_00018586 mRNA upstream 19909 39964945 ~ 39969988 (-) True XLOC_009463
TCONS_00018587 mRNA upstream 95119 40040155 ~ 40041455 (-) True XLOC_009465
TCONS_00018588 mRNA upstream 106182 40051218 ~ 40065296 (-) False XLOC_009466
TCONS_00018535 other downstream 2205129 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 3059929 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 3401048 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 4722058 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 4821509 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018590 other upstream 123975 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 1448365 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 1584224 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 2332637 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 2583754 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

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