RNA id: CI01000189_03950993_03958722.mRNA


Basic Information

Item Value
RNA id CI01000189_03950993_03958722.mRNA
length 2257
RNA type mRNA
GC content 0.43
exon number 7
gene id CI01000189_03950993_03958722
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3950173 ~ 3958722 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCAGTGACTCAGAAACCGAAGGCTGATGTGACTCGAGATCGCAAGTCGTGCCTCTGGGAACACAGGTTTAGTTTCACAGTCGGACACCGGAGCCACAGCTCGGAAACTGGAATCGGTGATGGCCACGCTCCAAACGCGACTTTAGTCAAGGTTAATTGGCTTTTCAAATTTGAAGATTCAAATGTCTGTATGCCGGGCTCCAGGTTTGTCAGTGTGGAGAGTTGGAGCAGTAAGCAGGTAGCTGGCTGGCTCAGAGAACAGGGGTTTCGTGAATATGTGGATCTCTTGTGCTCTAAACACCGTTTAGATGGTGCCAGCCTGCTGTGTCTTACAGAGACTGACTTGCGGTCTCCTCCGCTGGAGCTTAAGGTGCTGGGTGATATCAAGAGATTGATGCTGGCTGTGCGAAGACTACAGAGACAACACGCAGCCCACGTGCACTCAGGGTCAGAGGTCAGTGCATTGTCTCCCATACACACTGACGGAAAGGACCTTGTCATCTCTAATGGCTTCACAGAGCGAGGTTCAGGAGACCACCAACACTGTAATGGGGCAGTCACTACAGTTGGTGGTGAACACAGTTACTCAAATGGAAAGCGTAAGCAGTATTATGGTCGGTTGGACCCAGAGTACTGGAAGACCACCCTTAGCGCACTCTACGCCATGCTGGTGTGCGGAGTGACATCATTCGTCATGGTGCTAGTGCATGAGAGGGTTCCTGACATGAGGACATACCCGCCACTTCCAGACATATTTCTAGACAGTGTTCCCAGAATTCCCTGGGCCTTCGCCATGGCTGAAGCATGTGCAGTGGTGTTGGGTTCCATATTAATGCTGGTGTTGTTGATGCACAAACACAGGTCCATTCTGTTTCGCAGGCTGTGTAATTTGACAGGCACTGTATTCTTGCTCCGCTGTGTCACAATGTTTGTTACTTCACTGTCTGTACCTGGTCATCACCTACAGTGTTCAGGCAAGATGTATGGTGACGCATGGGCAAAAGTGCAGCGTGCACTGGACATCTGGACCGGGCTCGGCATGTCTTTAACTGGTGTTCAAACATGTGGCGATTACATGTTCAGCGGACACACTGTTGTTCTCACCATGCTCAATTTTTTTGTCACTGAATACACACCACGTAACTGGAACTTCGTCCACACCATGTCTTGGGTCCTGAACTTGTTTGGAATCTTCTTCATCTTAGCGGCTCATGAACACTACTCCATCGACGTCTTCATCGCGTTCTACATCACCACCAGACTCTTCCTGTACTACCACACGCTGGCAAACACACAGGCCTATCAGCACAGCCGGCGAGCGCGTATCTGGTTCCCTCTTTTCTCTTTCTTTGAGTGCAACGTGACCGGACCGGTTCCAAACGAGTATAGCTGGCCTTTCACCAAACCCGCCTTCATTAGGAAACTTCTAGGATAGGCCGTCTGTGTTTATGTTTAGCTTAGACTTTTGCTCCACAGTCTACAAATTTGGAGTTTTGGGGAAATTATTTATTTTTTTATTTATTGCTTTTGTTCATTTTCTTGAAACCGTTATTTGTAATACTGTATTCTCTCTAAATCAAAACATTGTTTTGGTGACTTTAACTTCTTATAATTTCACTATGTTTGCCTATATAACTATAAAGCCAAACTATAAAGCACATATAAAGCACATATATCTTTTTTTTTTTTTCTTATTCTGCAGAATCATATTTTCCATTATCTGGTAAAGCAGTTTTTAGTGCTTACAATTGCAGATTTATGTTACTCTAACCGTTAAGCACATAGTATTTAAACTCCTGAACACTAACAGTATGTTTAACAGAGGAAAAGTGCTAATATACATTCAGTCTTTATTAAATAATGATGCCTCATGCTGCCTCAGCTATTTCATAATGGTGCGTAAAGTCTTACAGCCACAGAGAGATAATTCTTGTTTTGCTAACATGTTTTTTGACATTTTGTAATTAATATGTGACTATTGTATAAATAGATTGAATTTTATATGTGATTCCAGGGATAGATTACTAGTATGAAATGTTTTGCCAATATCAGCATCAAAGACACTTTCAGCACTTTTATATAGACTTCTTTGGTTAAAGGGAGGGCATTTATGATTTCTTTTTGTTTGTGCATGTGGTGTTTGTGAATGTAACAAAAATTCTAGTACTGTTTCTTTTTTGTTGTTTTATTTAAATGTAACTTGACTTCTGCCTTATCAATTGGGGTACCCAGAGGATATTTACTGGAAAAATAAA

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436816 lncRNA downstream 194249 3755718 ~ 3755924 (-) True G382094
TU436815 lncRNA downstream 198172 3751722 ~ 3752001 (-) True G382093
TU436752 lncRNA downstream 237721 3712227 ~ 3712452 (-) True G382036
TU436680 lncRNA downstream 252476 3696886 ~ 3697697 (-) True G381978
TU436711 lncRNA downstream 262894 3638729 ~ 3687279 (-) True G382003
TU436760 lncRNA upstream 6854 3965576 ~ 3976937 (-) True G382044
TU436770 lncRNA upstream 81819 4040541 ~ 4044999 (-) True G382051
TU436858 lncRNA upstream 86515 4045237 ~ 4045696 (-) True G382132
TU436859 lncRNA upstream 88541 4047263 ~ 4047563 (-) True G382133
TU436860 lncRNA upstream 89227 4047949 ~ 4048367 (-) True G382134
CI01000189_03903426_03904603.mRNA mRNA downstream 45570 3902934 ~ 3904603 (-) True CI01000189_03903426_03904603
CI01000189_03699588_03706531.mRNA mRNA downstream 243339 3699248 ~ 3706834 (-) True CI01000189_03699588_03706531
CI01000189_03608917_03613975.mRNA mRNA downstream 336198 3608235 ~ 3613975 (-) True CI01000189_03608917_03613975
CI01000189_03557950_03558676.mRNA mRNA downstream 391497 3557808 ~ 3558676 (-) True CI01000189_03557950_03558676
CI01000189_03546199_03556875.mRNA mRNA downstream 393298 3546199 ~ 3556875 (-) True CI01000189_03546199_03556875
CI01000189_03980640_03981210.mRNA mRNA upstream 21891 3980613 ~ 3981210 (-) True CI01000189_03980640_03981210
CI01000189_03983572_04013988.mRNA mRNA upstream 23644 3982366 ~ 4014133 (-) True CI01000189_03983572_04013988
CI01000189_04017195_04030340.mRNA mRNA upstream 58299 4017021 ~ 4030340 (-) True CI01000189_04017195_04030340
CI01000189_04058639_04097730.mRNA mRNA upstream 99204 4057926 ~ 4097730 (-) True CI01000189_04058639_04097730
CI01000189_04120947_04130707.mRNA mRNA upstream 161615 4120337 ~ 4130707 (-) True CI01000189_04120947_04130707
TU436773 other downstream 57264 3885562 ~ 3892909 (-) True G382052
TU436781 other downstream 117560 3830627 ~ 3832613 (-) True G382060
TU435927 other downstream 943729 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 986719 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 3051733 894220 ~ 898440 (-) True G380177
TU436879 other upstream 186868 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022659 False 4624 mRNA 0.35 5 NC_007128.7 20576848 ~ 20590238 (+)