RNA id: TU436773



Basic Information


Item Value
RNA id TU436773
length 4565
RNA type TUCP
GC content 0.41
exon number 3
gene id G382052
representative True

Chromosome Information


Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3885562 ~ 3892909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCAAACCCTCCGAAGCACATGAGAATGCCGTGAGCCTGACTGAGTCGTTCCATGCCCACTATCTTGGTAGTGATGTAGGACGTGAGAGACCAGTTCCCTGAGAAAAATCCAACCATGGCCGACAAAACTTGCAGAGTCAGGTAGCTCTTAGACACTGGGATGAGCAGCAGAGTCAAACCTGTGCCTGTCAGCGTCAGGGCATACAGGTACAGGCTGTTTACCCATCGCATGTCTGCCAGCACACCCAGGACCAGCTTACCAATGCCAGTTGTCATTGCAACGATTGAGACAAGGGGTATTAGTGCAATCCCATCGATAAGCCCCTCGCTCTGGGCTACGTCCTCCATGAAGAGAACAGGTGGGAATGCCCCTAAGCTGAACAAGAAAATAGCAATGCAGAAAGCCATGAAGACACGGTCCTGTAGGAGCTCTATAGTCTCGCACATGTACCGTCTATAGGGACGCATCCGCTTCTTAATGGCTCGTGCTACTATTGAACAGGACAATATCCTGCCATTTCTTTCCCCTTCACTCTCTTGCAGCTCTGTGGATTCCTTGGTGATCAACAGCTTAATGGCGACTATGTTATTGGCCGAGCTGGGTGTGGTTTTGAGATCTGAGCCAGAGTCAATGATAATTGCAGTTGGTTTGGTGTAGAGTGGTTCTGGTTCCTCTGTACGCTGTAGAGCAGCTCTCTGTTTTAGGTAGTAACCAGGTAAGTTCATAGGTCGCATTGGCCCAGCACATGCCATCAGGTTGAGCGCCAGCGCTCCAACGATAAGCAGGCAGCCCTCCAATCCAAACAACTCAATGAGTTCATTCTGGAGTGTGGCGTAAGTGAACCCACCCACACTTGTACCTGAGAAGAATGAAAAGAAATATCATCTGACCCATTCTGAAAAATCATCTTAAAGAAGAACATAACCATGCAGAATCTATTGAATCTGGGAATAATTTTTTTGCTATCTGCTCCACATCTAATGAAAGTTTAAAAAAACTCTTTATGCATTTTTTTCCCACTAAATTTGCCAAAGCAAAAAATTATTTGATACAAACTAAGGTATCAATGAAATATTGTAATATATGGGCTCTTGCTTCAAAGCTTGAGGATGTCCTCCCCACTATTGTTTCCAATGATCAAACAAGGTTTATAAAGAATCACCAACCTTTTTTCAATATCCGTTGTTTACTTAATGTTCTATATTCTAAGCAACAGGCTATCCCAGTGTGAGTGTTTGGTCTCTTTAGATGCCGAGAAGGCATTTGATAGGGTGGAGCGGGAGTACCTTTTCTTAGTTTTGAAAAAAATTGGATATGGCCTGGTCTTTCTTTCTTGTATTAAATTATTATATAGTGCTCCTTCCGCAGTAGTCCTGACCAATATTCTGTACTCTAGACCATTTAATTTGTACCATGGGACTCGACCGGGCTGTCCTTTAAGCCCATTATTATTCGCTTTAGCCATTGAGCCTTAAGCAATTGCCCTAGTCAGCAGATTATTGGAATTACTTGTGGTGATGTAGAGCATAAGGTAACTTTATATGCAGACGATCTATTGCTTTTTCAAATCCTCAGACTTCTTTACCCACCGCCCTATCCTTGCTTGATAATTTTAGTCAGTTTTCTGGTTAAAGGTTTAATCTGCACATGAGTGATTTATTTTCCAATCAACAAGGTAGCTACGCAATTACAGTATACCACTAAAGCCAGTCAAAAGTAAATTTACTTATTTTGGGATCTGTATTACACAACATCATAAGCATATTTTTAAACACAATTTTGGTAAACTTCTCGAACAGATTAAAAAAGATCTTTCCAGGTGGTCCCCTTTGAAAATTTCTCTCACTGTGTGCATTAATTCTATTAAAATGGTTAAAATCTCTATTATTTCTACTTATATTTGGAATGGTAAGCATCCCCATCTGTGTAAAGCATTCAGAGGTCCGGATGCAGCGGTAGGTATGGCCCTACCTAACTTTAAGTTTTACTATTGGGCAGCCAACATACGAAACACACTGTATCGGTGTCACTATCACTTCTTGCCTAACAGACCATCCTGGTTGGATATGGAAATACATTTTTATAAGCAAATCAACCTTCCAGCAGTTCTTGCAGCTAGACTACAACTAATTTCCTACACTCCTGCTGAATGCCCAGTAGTGAAACACTTGCTGAAGATTTGAACCCAGTTCAGAAAATAATTTGGCTTTCAGGATTTTCCTCTCTTCTTAGCCCTATTGTTCGTAATCACTTTTTTGCCTTCAATGCAGGATGGATCATTTAAGAGATGGTCTGACAAAGGGATAAAATGTTTCAGACTTATTTATTGACAATTAATTTGCTTCCTTTGAAAGGGGGATTGTTGAATCTGATTTGTATTGAAAAACAAGTAATACCGAAAAAAACTTTGAAAGAGAAAATATCATAATACACATTTCATTCCATAAAGTGCAGTTACATTCAAAGAGAGAGTTTAAAGGTCACACCTGTGGTAACAATGCCCAGTGCTAGGCCACGCCTCTTGTCAAAGTACTGGCAGGTTATGGTCAATGTGGCAGCATAGACAAGTCCGCAACCCATGCCTTAAACACAAAAACATGAATGTAGCATTTCATAACTATATTTACACATTTAAAATCTCTGCAACTATAATTTTAATGTCTATATATATATATATATATATATATATAAAATACACACACACACACACACGCACTAAAGGCCTTGTCGCCATTGTTTTTTATATAATTTCCCATATCATGTACTTCTGATTGAGGGGAAAAAAGAAGTAAAGATACCTCAACAACAGGACGTAAACACTGAGTAGATTAACTCTGGTGTAAGTAAAGTAACACCACTGAACTGAATATGCAATGGTATTTGTGGATAGTACATTTCTGTGTGTGTGTGTGTTCAGAGGAGGGGTCGGCACTGTAAACAGTGATGGTACCATGGTTTCAAATTCTAAATTGTCAGTGAATGTTATATAATCATAAAAGCAACCCTGTCACAAACACTCCAACATATGCTTCTGACATAAGCAAACTATTTAGCACTTACTATTAATCATACACACAAACACATACATCAGACACACATCACTCTCGACCAATTCACAGAACCTGATTTCACAAAGTGCAACATGTTCCTAGATCAACATCCTTTTTTATCCTGGAACAACATTCCAGTCAATCAATCAGATTTGAGGGACAAGTTTACAGTTTATGTGAAGTTTAGGCTCACAACCAGGGGTAAGTGCTTCTACATCAGTGTTATTCAGTTAATCATTTCCCTGTGATTTTAGGGATAACTTATGAGCAGAGCAATGTTGTTCCAGGACCAACAAAATATGTTGACCCAGGAACATGTTTAACTCTGCAAAATCAGGATGTGCCTACTAATACAGGGCATTCACACGTAGACTCACATGTTCATATAAGTTTGAAGGTCAAAAAACAGACACAAACACATCTGTTTCTCAATACCAGCAAACTGCTTTTCAATTAACGCTAACGATGCTTTTATTTTCTTACCGACAACAATGCCGTAGGAGAAGATGAGAAAAGAGACACTCGGAGCAAAAGCGCTCAGCATCAGACCGCCGGCCACCATCACACCGCTGAAGACAGTAACTGGCCGTGCACCGAAATTATCCACACAGGCACTGCACACCGGGCCTATGGTGATGAGTGCCACACCAGACACCATGGATCCGACCCAAGCCGTCATGCCTTTTCCTTCCTGGAAGGCACTGAGCCACTCGGGGTACAACACCCCAACGGACTGGGGGGATCCTAATGACAGGAACTGGGCCATGAAGGAGGTCAACACAATCATCCATCCCCATCCACCATCTAATGCACCCTCATCCTTTAGAGCACCCATTCTCAGCAATGATCTTACACTGACTTCACTTGACACAGGGGCCGGCAGGTAGATGTTGCTTTTGCTTGCAGAGAGCGGTGTGCTGAACCGCTCGTGCCTGGTAAACCAGGCCAGCCTCACGTGCTTCTTTGCTGAATACCTTCTCGAGATCAGCAACGCGCGCCGCCAAGTTTTAAACGGTTCTGGATACAGACCACACCTCGAAGGTGGAGAGACCACAGACCGGACTGCCTTCTTATCGCCCTGTTTTCTTTATATTCGTCCATAACATAGATAACAACCTGCAGTCGCGAGGAGAACTGGTGCCGCTTGGAGCGCGCGGATGCATCTTTCTCTCTCCAGCGCGCACAGAGCGGTGCAACGGAAGAGTGCTGAAGTTTCTCATTTTCTCAACATGCGCCCTTCTATCTCGTGAAATAACTAACCGGTTTGAAGCTGTTTTCACCGGCCAGACTTGTGAGATCAACTGTACGATCAACTGGCAAGAAGAGCGATTGAGTCTAGTATTTTATATCGCGTCCCAGGAAAACTATACTGTTGCTTTAAAATGCTGGTATAATAATAATAATGATTATTGTTATGTAAATTAACATTTTAAAATTCAAAATAAATAAAATAAAATCACAATTAATTATAATACTTTATTAATATAGCATAGCATCAATATTATAAAACTACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU436816 lncRNA downstream 129638 3755718 ~ 3755924 (-) True G382094
TU436815 lncRNA downstream 133561 3751722 ~ 3752001 (-) True G382093
TU436752 lncRNA downstream 173110 3712227 ~ 3712452 (-) True G382036
TU436680 lncRNA downstream 187865 3696886 ~ 3697697 (-) True G381978
TU436711 lncRNA downstream 198283 3638729 ~ 3687279 (-) True G382003
TU436771 lncRNA upstream 6582 3899491 ~ 4044999 (-) False G382051
TU436760 lncRNA upstream 72667 3965576 ~ 3976937 (-) True G382044
TU436770 lncRNA upstream 147632 4040541 ~ 4044999 (-) True G382051
TU436858 lncRNA upstream 152328 4045237 ~ 4045696 (-) True G382132
TU436859 lncRNA upstream 154354 4047263 ~ 4047563 (-) True G382133
CI01000189_03699588_03706531.mRNA mRNA downstream 178728 3699248 ~ 3706834 (-) True CI01000189_03699588_03706531
CI01000189_03608917_03613975.mRNA mRNA downstream 271587 3608235 ~ 3613975 (-) True CI01000189_03608917_03613975
CI01000189_03557950_03558676.mRNA mRNA downstream 326886 3557808 ~ 3558676 (-) True CI01000189_03557950_03558676
CI01000189_03546199_03556875.mRNA mRNA downstream 328687 3546199 ~ 3556875 (-) True CI01000189_03546199_03556875
CI01000189_03517928_03524647.mRNA mRNA downstream 360850 3517283 ~ 3524712 (-) True CI01000189_03517928_03524647
CI01000189_03903426_03904603.mRNA mRNA upstream 10025 3902934 ~ 3904603 (-) True CI01000189_03903426_03904603
CI01000189_03950993_03958722.mRNA mRNA upstream 57264 3950173 ~ 3958722 (-) True CI01000189_03950993_03958722
CI01000189_03980640_03981210.mRNA mRNA upstream 87704 3980613 ~ 3981210 (-) True CI01000189_03980640_03981210
CI01000189_03983572_04013988.mRNA mRNA upstream 89457 3982366 ~ 4014133 (-) True CI01000189_03983572_04013988
CI01000189_04017195_04030340.mRNA mRNA upstream 124112 4017021 ~ 4030340 (-) True CI01000189_04017195_04030340
TU436781 other downstream 52949 3830627 ~ 3832613 (-) True G382060
TU435927 other downstream 879118 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 922108 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2987122 894220 ~ 898440 (-) True G380177
TU434342 other downstream 3120185 753257 ~ 764109 (-) True G379912
TU436879 other upstream 252681 4145590 ~ 4146084 (-) True G382153

Expression Profile