RNA id: TU436283


Basic Information

Item Value
RNA id TU436283
length 2141
lncRNA type intronic
GC content 0.34
exon number 2
gene id G381627
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4085628 ~ 4088190 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCACTTGAAGCATTTAAAATGACTGATTTTCGTTTTTAGCGATTTGTCTTTTATTTATTTAGAAAAAAGTATAGAATTTTAATATCAGTTAGATCATATGAAATAATAATATGAAAATAATCATCAGCTATAATTTTAATACCTTTAAACCAGTCTACAGAGTTTTTATAGCACACAGACTGAGCACTGAACATTTGTTGTCCTGTAAGAATTGAATGTTGCATGAGGTTTAAAGACATTGCTTTCAATCATTTATGAGCCTAACAGATACATTACCCACAATGCACCACTGCAGCGGTCATATTTCACATAGATGCATTACAAGCACTGACAGATGCCCCACCTGCATCCATATGGTAGATCCTTCCCCAACCACACGCTCACTGCACAATAAATAATGACAGACATTCTCATAAACAAGCTCAAATTGGCATTTGTAAGGCCACCTCAGGTTTCACACTAGTGCTGCAAATCGCTAAAAGAAAAAAAAAAAGAAGATGTTCCTCTGGTTAGAACGAAAGATTAGGTTATAGGATGAACTTGTCTCCTACTCCTTCAGCTTTCCCATGCCTTCCCTTACCCTCCTACAACAGGAAGATCACTGACTAATTCTGTTACTCTCTGCAAAAGATCTTTTACTCTCTTAATCTCTCTGCAATCAGAAGGTCTATCAGAGTAAACAAAATCAAATTTTTGCTGACAGAGATTAATCCACCTGTGAGATCCTCCATGTTTAGTTCACCTGGGCATCAAAGCAGCACTATTCTAGACACTCTCCTTTTCATTTCCCTCTTTCTGTTTGATTCGTTTTGCTCCAAAAATAGTTGCCTGCCTTGTTGCCACTGTGTGACTCGACTCACAATTGATTTCTATAAGTTTAAAGTTAGCATGTTGCTAAGCTAACAGCTTTATACATTAATTTGCAAAAAATAGACAAATGTTGAGTAAAAACTGAAAAAACTACATTACTGTAGCTTAATCAGTAGAACATGGTGATAGCAACTGCAATGTCATAATTTAGAATCTCAGGAAATGTATGAACTGATAAAATGTGTACCTTGAATGCAATGTAAGTTACATACAGTCAAACTAAAATTTATTCAGACACCTTGAACATTTCATTCATTATTACAATTCATTCACTATAGTTTAAAAAAATGGTAATAAAATATGACAAGATCAGATAACACTTAAGCAAAACATGGTCAGGTCAAAGTGTCTGAATAATTTTTGGTCCCAAATTTTTATCAATTTTACTGGTAGTCCACTGTATGAAGAAAGTTTTGGGTAAAATATGTCACAGTTTACTTTATTTTGCTATCCTCTCTTACATAAATTAACTATAGTGTCCTGTACCCACCAGTAAAAAAAAAAAATATATATATAAAAAATATATCTAGTGTCTGAATAATTTTTGGTTTGACTGTATGCCAAATACATACAATACTTTGTAACATTATAAAATTTCGTACTGTTTTTTCCCCTCCAAAAAATCTTGACGAAGCCATAAACGCACACAAACTTTAGAACAGTAGTGTATATTCTATTGTAATATTTATTAATATATTTTATTTCCATTATATTTCATTAGACTTAATAGCTTTATTTTGACTAATTTATTGATACTTTTTGGCTTTGAACAAATAAGTATTTATAATCATATCTTGCATTGTCCATCTTGGACAGTTTTTTTTTTTTTTTCATTTGTTTCAATCATTCTGGGATTTTCTTATCCATTAAGGATACATACAATGCCATCTTAAAATTTAGCCAAAAATTTCTGAATGCAGCGTAATGATGCAGCCTTCATGTTGAGAGCGTGCCTATGCTGCCTTAAAAGACTGCTTATATAGGCAGCTCACTAGGTTTTGGCTTCTGTGTGAAGCTCCTACAATAAAAGCAAGGCACTACTCTACATGAAGAACGTGTAGGTATACGTACGAGTAGTCGTCAAACACACATCTCCATGGTGCAGAGGCCGTGGTGCAGGGGGAGAGTGTGGCATCAAAACACACATAAATAACATGAGACGCACAGACATACACAGGCTGATGAGGTTAATGAGGCATTTGAAACAAACAAACAAAAAAAGGCACAAAGACAGACAGGGAGTTAGTTGGCAAACAAAAAGCTCAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436292 lncRNA upstream 28765 4056378 ~ 4056863 (+) True G381636
TU436290 lncRNA upstream 33305 4052099 ~ 4052323 (+) True G381634
TU436289 lncRNA upstream 34534 4050784 ~ 4051094 (+) True CI01000189_04049709_04050966
TU436278 lncRNA upstream 38464 4046031 ~ 4047164 (+) True G381622
TU436288 lncRNA upstream 54322 4030319 ~ 4031306 (+) True G381632
TU436349 lncRNA downstream 181153 4269343 ~ 4269575 (+) True G381681
TU436350 lncRNA downstream 181828 4270018 ~ 4270288 (+) True G381682
TU436428 lncRNA downstream 425293 4513483 ~ 4514076 (+) True G381756
TU436375 lncRNA downstream 488521 4576711 ~ 4577189 (+) True CI01000189_04576234_04577598
TU436376 lncRNA downstream 490309 4578499 ~ 4578665 (+) True G381705
CI01000189_04049709_04050966.mRNA mRNA upstream 33929 4049709 ~ 4051699 (+) False CI01000189_04049709_04050966
CI01000189_04038185_04043995.mRNA mRNA upstream 41034 4038185 ~ 4044594 (+) True CI01000189_04038185_04043995
CI01000189_03967133_03967547.mRNA mRNA upstream 117954 3966981 ~ 3967674 (+) True CI01000189_03967133_03967547
CI01000189_03884911_03893327.mRNA mRNA upstream 191049 3884911 ~ 3894579 (+) True CI01000189_03884911_03893327
CI01000189_03865371_03880187.mRNA mRNA upstream 205327 3864646 ~ 3880301 (+) True CI01000189_03865371_03880187
CI01000189_04099205_04099517.mRNA mRNA downstream 11015 4099205 ~ 4099724 (+) True CI01000189_04099205_04099517
CI01000189_04103153_04114542.mRNA mRNA downstream 14963 4103153 ~ 4115337 (+) True CI01000189_04103153_04114542
CI01000189_04170533_04184962.mRNA mRNA downstream 82343 4170533 ~ 4185273 (+) True CI01000189_04170533_04184962
CI01000189_04576234_04577598.mRNA mRNA downstream 487966 4576156 ~ 4578035 (+) False CI01000189_04576234_04577598
CI01000189_04674916_04701633.mRNA mRNA downstream 586726 4674916 ~ 4701679 (+) True CI01000189_04674916_04701633
TU436136 other upstream 458773 3625736 ~ 3626855 (+) True G381491
TU435687 other upstream 1244503 2839221 ~ 2841125 (+) True G381120
TU434037 other upstream 3026243 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434221 other upstream 3072725 1012546 ~ 1012903 (+) False G379799
TU436323 other downstream 32197 4120387 ~ 4122344 (+) True G381655

Expression Profile