RNA id: TU436350


Basic Information

Item Value
RNA id TU436350
length 271
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G381682
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4270018 ~ 4270288 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCAAAGCTGACAGTCTTCAGAGTCGCATGATCCTTCAGAAATCATTCTAAGCCAATTTGCTGCTCAAGCAACATTTCTTATCAAACAGATTTGCTGCTTAATGTTTTTGTTGAAACCTTGATAAACCGTTTTTAAAAAAAATCAGGATTCTTTGTTGAATATAAAGTTAATAACAGCAATGATTTTGAAACAGAAATGTTTTTTTTTTTTTTAACATTATACGTCTTTACTGTCACTTTTGATCAATTTAAAGCATCCTTGCTAATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436349 lncRNA upstream 443 4269343 ~ 4269575 (+) True G381681
TU436283 lncRNA upstream 181828 4085628 ~ 4088190 (+) True G381627
TU436292 lncRNA upstream 213155 4056378 ~ 4056863 (+) True G381636
TU436290 lncRNA upstream 217695 4052099 ~ 4052323 (+) True G381634
TU436289 lncRNA upstream 218924 4050784 ~ 4051094 (+) True CI01000189_04049709_04050966
TU436428 lncRNA downstream 243195 4513483 ~ 4514076 (+) True G381756
TU436375 lncRNA downstream 306423 4576711 ~ 4577189 (+) True CI01000189_04576234_04577598
TU436376 lncRNA downstream 308211 4578499 ~ 4578665 (+) True G381705
TU436458 lncRNA downstream 326188 4596476 ~ 4596717 (+) True G381786
TU436464 lncRNA downstream 356434 4626722 ~ 4626948 (+) True G381792
CI01000189_04170533_04184962.mRNA mRNA upstream 84745 4170533 ~ 4185273 (+) True CI01000189_04170533_04184962
CI01000189_04103153_04114542.mRNA mRNA upstream 154681 4103153 ~ 4115337 (+) True CI01000189_04103153_04114542
CI01000189_04099205_04099517.mRNA mRNA upstream 170294 4099205 ~ 4099724 (+) True CI01000189_04099205_04099517
CI01000189_04049709_04050966.mRNA mRNA upstream 218319 4049709 ~ 4051699 (+) False CI01000189_04049709_04050966
CI01000189_04038185_04043995.mRNA mRNA upstream 225424 4038185 ~ 4044594 (+) True CI01000189_04038185_04043995
CI01000189_04576234_04577598.mRNA mRNA downstream 305868 4576156 ~ 4578035 (+) False CI01000189_04576234_04577598
CI01000189_04674916_04701633.mRNA mRNA downstream 404628 4674916 ~ 4701679 (+) True CI01000189_04674916_04701633
TU436323 other upstream 147674 4120387 ~ 4122344 (+) True G381655
TU436136 other upstream 643163 3625736 ~ 3626855 (+) True G381491
TU435687 other upstream 1428893 2839221 ~ 2841125 (+) True G381120
TU434037 other upstream 3210633 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434222 other upstream 3257184 1012546 ~ 1012834 (+) True G379799

Expression Profile