RNA id: CI01000304_12353305_12359214.mRNA


Basic Information

Item Value
RNA id CI01000304_12353305_12359214.mRNA
length 1835
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000304_12353305_12359214
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12353006 ~ 12359838 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAATCCAGTTTAAAAAAAGTATGAGCCAGTGATCTTTGAGCTTTGTTGAGCGGCTGTTAGAACTGAGCTAAAATGTGATCTCCAAATGTTTATCTGGTCTGTCATTAAAGTTAACTGACCAGGAAACACAGAACTGGAAAAGGTATCATAAAGAACAGCACATTTCGGAAGTCTTCGAACTTTCTGGAAAAAACAAGTCCACTTTTGCCAAGTCCCGTAACAGTATCCAACATATTTAAGCCTCATTACAATTCAGAAACTTCTCCTGTGTCCATTAAAAAATACTAAAACAGACATGGACTGGAGATTTGGTTTTAGATGCATTAATAGGACCACTGGCTATTCGCGGGTTTATTGGGGAACTATGGCAGACCGTTCCAACTGTTTTTACTGTCGCGAGGACCTCAGTGGAAAGAAGTTCGTGAGGAAAGACGAGAAACAAGTCTGCGTGCGATGCTTTGACAAGTTCTGCGCCAACACCTGCACAGAGTGTCGACGCCCAATCAGCACCGAGTCTAAGGAGCTTCACCATAAAGGGCGGTACTGGCACTCAGATTGTTTCCGATGTGCAAAGTGCTATAAAAATCTGGCCAAGGAGTCTTTCACCTCCAAGGATGACAAGATCCTGTGTGGGACGTGTAGCTCACGTGTGGATGCCCCTCGCTGCCATGGCTGCTACAAGCCCATACTGGCAGGCACTGAGAATGTGGAATACAAAGGCAACTCATGGCATGATGAGTGTTTCATCTGCTATCAGTGTCAAAAGCCAATCGGCTCCAAAAGTTTCATAACAAAGAACAACAACATCTACTGCAGCCCTTGCCACGAGAAGAAATTTGCCAAACAATGTGCTTGCTGTAAGAAGCCCATTACCACAGGAGGTGTGAATTACCAGGACCAGCCGTGGCATTCAGAGTGCTTTGTGTGCTCCTCCTGCCGAAAGCCTCTGGCTGGCACCCGCTTCACCTCCCATGAGGAAAAGGTCTACTGTGTGGACTGCTACAAAAGCACTGTGGCCAAAAAATGCAGCGGCTGCCAGAATCCTATTACAGGATTTGGCAAGGCTACGAACGTAGTGAACTATGAGGGTGGCTCTTGGCACGATTACTGCTTTAACTGTAAGAAATGCTCCCTCAACCTGGCAGACAAGCGCTTTGTAGCTCGCAATGGAGACATTTACTGCTCTGACTGCTCCAAGAAGCTGTAAGCGCCTGCTCACCACGGAGACGCAGAAAAGTGAGATTAATTCAGAAAAAATATCAGCATTCATTTCAATTTATACAGAAATCCCACATAAATATGTTGAAGTATTGACAAAGGCTTCTGTTATGTTGGTTCTGGCTTCTTTATGAGGGGAGTTTGATATTTCCTGTGAGAAATGTTACGTTTACCTAGAGGCTTTGATTGGAAAACTTATCCTCTCTCTTTCCAAAGGCCCATTTGTCTCAGGAAAGATAGTGAGAAAGGATGAAAGATGGATAATGAAGAGAGGTGAGAAGAATTTGAGAGGTTGTTTAAGATTTATTGCCGGTACATCTGTGTTTCAGAACGACTCGTTTCATTGTATCTAATGAAGCTTTGTGTTTGTAACTTTTAAATCTGTAACAGCTTGTAATCGTGGCCGCTGAACTTTACAGTACTAGGTGTTTTGGTATATTGCTTCTTTGTGATTTGAAATACTAATTGTACATTTTGTGTCACTGACATATAAAAACCTATACTGGAAAAAATGAAAATGTGTAGCTTTTGTCTCTCTTTTTTACTTACACATTCTCCTTGCTGTAATTAAAATGAAAACTATGTTATTTTACCTTTGTATGATCTGAGAAAA

Function

GO:

id name namespace
GO:0007626 locomotory behavior biological_process

KEGG:

id description
K14365 FHL1, SLIM1; four and a half LIM domains protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488915 lncRNA upstream 50280 12302340 ~ 12302726 (+) True G425764
TU488916 lncRNA upstream 52384 12300413 ~ 12300622 (+) True G425765
TU488779 lncRNA upstream 95812 12255099 ~ 12257194 (+) True G425666
TU488771 lncRNA upstream 178947 12172882 ~ 12174059 (+) True G425660
TU488745 lncRNA upstream 236640 12111311 ~ 12116366 (+) True G425635
TU488929 lncRNA downstream 95343 12455181 ~ 12455395 (+) True G425777
TU488930 lncRNA downstream 95655 12455493 ~ 12455853 (+) True G425778
TU488950 lncRNA downstream 201236 12561074 ~ 12561425 (+) True G425796
TU488876 lncRNA downstream 229083 12588921 ~ 12589788 (+) True CI01000304_12583384_12588591
TU488972 lncRNA downstream 231418 12591256 ~ 12593865 (+) True G425812
CI01000304_12340979_12347664.mRNA mRNA upstream 5116 12339847 ~ 12347890 (+) True CI01000304_12340979_12347664
CI01000304_12314575_12337592.mRNA mRNA upstream 15316 12314316 ~ 12337690 (+) True CI01000304_12314575_12337592
CI01000304_12213555_12231910.mRNA mRNA upstream 120274 12212054 ~ 12232732 (+) True CI01000304_12213555_12231910
CI01000304_12065676_12071391.mRNA mRNA upstream 281576 12064819 ~ 12071430 (+) False CI01000304_12065676_12071391
CI01000304_11993486_12061098.mRNA mRNA upstream 290788 11993486 ~ 12062218 (+) True CI01000304_11993486_12061098
CI01000304_12362738_12374610.mRNA mRNA downstream 2900 12362738 ~ 12374610 (+) True CI01000304_12362738_12374610
CI01000304_12375591_12385064.mRNA mRNA downstream 15753 12375591 ~ 12385120 (+) True CI01000304_12375591_12385064
CI01000304_12385473_12389970.mRNA mRNA downstream 25635 12385473 ~ 12390527 (+) True CI01000304_12385473_12389970
CI01000304_12394477_12400175.mRNA mRNA downstream 33662 12393500 ~ 12400315 (+) True CI01000304_12394477_12400175
CI01000304_12424217_12429262.mRNA mRNA downstream 63368 12423206 ~ 12429408 (+) False CI01000304_12424217_12429262
TU487556 other upstream 1797302 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 2160111 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 2161208 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 2225684 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 2787433 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 68867 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 68867 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 77966 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 1196613 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 1970210 14330048 ~ 14330886 (+) True G426312

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004175 False 1805 mRNA 0.42 6 NC_007121.7 26597990 ~ 26621189 (+)