RNA id: TU487124



Basic Information


Item Value
RNA id TU487124
length 228
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G424199
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9668750 ~ 9668977 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTGACAGAAGTGAATGAATGTGAAGCCAGATAAAAGACAAAGGAAATAGAAGGAAATGTTGATGGGAAAGAAAGGATGAGGTTCTTTTCTTTTAAGTAAACTCTTGTTCTGTCAAGAGCTGAAAGATTTCTCAGCAATGTGCTTGCACATCATTCTGTGTCCTTTCATCTGCCCATCCCTTTCTTCTTCTTCTCCTTAATCTTCTACCCAATCATCCCCATTTCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU487122 lncRNA downstream 7733 9660595 ~ 9661017 (-) True G424197
TU487121 lncRNA downstream 8425 9659583 ~ 9660325 (-) True G424196
TU487079 lncRNA downstream 9463 9658330 ~ 9659287 (-) True G424170
TU487115 lncRNA downstream 18873 9649661 ~ 9649877 (-) True G424190
TU487113 lncRNA downstream 22685 9645814 ~ 9646065 (-) True G424188
TU487125 lncRNA upstream 2210 9671187 ~ 9671733 (-) True G424200
TU487126 lncRNA upstream 2767 9671744 ~ 9672047 (-) True G424201
TU487127 lncRNA upstream 5896 9674873 ~ 9675087 (-) True G424202
TU487133 lncRNA upstream 7152 9676129 ~ 9691240 (-) True G424203
TU487078 lncRNA upstream 25548 9694525 ~ 9695379 (-) True G424169
CI01000304_09622805_09640521.mRNA mRNA downstream 28210 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09609674_09619712.mRNA mRNA downstream 48720 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09577749_09578512.mRNA mRNA downstream 90238 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09566730_09575706.mRNA mRNA downstream 93044 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09508090_09519201.mRNA mRNA downstream 149417 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09699524_09703985.mRNA mRNA upstream 30391 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09720695_09725068.mRNA mRNA upstream 51299 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09726631_09727403.mRNA mRNA upstream 56970 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
CI01000304_09737662_09738777.mRNA mRNA upstream 68249 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09751291_09754997.mRNA mRNA upstream 81944 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
TU487066 other downstream 99716 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 803454 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2016047 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2885704 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 3037251 6631086 ~ 6631499 (-) True G422354
TU487077 other upstream 67769 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 484469 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 484882 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 521597 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 775378 10444355 ~ 10542665 (-) True G424808

Expression Profile