RNA id: TU490017


Basic Information

Item Value
RNA id TU490017
length 237
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G426784
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14847612 ~ 14847848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTTTTGTCTCTTTGGAGCTTGACAGCCCCAGCCCTCATTTACTTTCATTAAATTGAAAATAATGGATAGGATATTCGACTTTTGTGTCATAAGTCATATGATTTTTGGCAAATATGTAGAGTAAATAATGACAGAATTTTCATTTTTGAGTGAACTATTCTATCAAATATATTGTAAATGCTTGGCAAAGACAGGGGAACTGAAGATATTCTCAGTGATCTTTCAATGAACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490014 lncRNA upstream 2621 14844725 ~ 14844991 (+) True G426781
TU490013 lncRNA upstream 3157 14844217 ~ 14844455 (+) True G426780
TU490012 lncRNA upstream 3707 14843700 ~ 14843905 (+) True G426779
TU490011 lncRNA upstream 4534 14842872 ~ 14843078 (+) True G426778
TU490009 lncRNA upstream 5528 14841809 ~ 14842084 (+) True G426776
TU490020 lncRNA downstream 3319 14851167 ~ 14851385 (+) True G426787
TU490025 lncRNA downstream 13179 14861027 ~ 14861272 (+) True G426792
TU490026 lncRNA downstream 20035 14867883 ~ 14868157 (+) True G426793
TU490029 lncRNA downstream 24700 14872548 ~ 14872858 (+) True G426796
TU490031 lncRNA downstream 26142 14873990 ~ 14874261 (+) True G426798
CI01000304_14695603_14740389.mRNA mRNA upstream 106533 14695603 ~ 14741079 (+) True CI01000304_14695603_14740389
CI01000304_14356867_14373980.mRNA mRNA upstream 472946 14356586 ~ 14374666 (+) True CI01000304_14356867_14373980
CI01000304_14352375_14355516.mRNA mRNA upstream 492096 14352375 ~ 14355516 (+) True CI01000304_14352375_14355516
CI01000304_14331169_14331855.mRNA mRNA upstream 515639 14331064 ~ 14331973 (+) True CI01000304_14331169_14331855
CI01000304_14304022_14317252.mRNA mRNA upstream 529587 14304022 ~ 14318025 (+) False CI01000304_14304022_14317252
CI01000304_15034188_15038152.mRNA mRNA downstream 184369 15032217 ~ 15038498 (+) False CI01000304_15034188_15038152
CI01000304_15040739_15045239.mRNA mRNA downstream 192704 15040552 ~ 15045257 (+) True CI01000304_15040739_15045239
CI01000304_15047768_15063987.mRNA mRNA downstream 199920 15047768 ~ 15064170 (+) True CI01000304_15047768_15063987
CI01000304_15140709_15147357.mRNA mRNA downstream 292713 15140561 ~ 15147557 (+) True CI01000304_15140709_15147357
CI01000304_15148523_15151340.mRNA mRNA downstream 299986 15147834 ~ 15151395 (+) True CI01000304_15148523_15151340
TU489538 other upstream 516726 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 1268765 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 2408526 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU490061 other downstream 101042 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 1037606 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 1235382 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 1657014 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1908098 16755946 ~ 16761111 (+) True G428157

Expression Profile