RNA id: TU490009


Basic Information

Item Value
RNA id TU490009
length 276
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G426776
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14841809 ~ 14842084 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAACTAACCATGAGTGTTGTGTCCTTGGGAATAAATTTCACTTTGTTGCACTGAAAGAGAAGAAAGAGGTGCTATTGTACGACTTGTTTGAAGGTTGTTTCTTCTCATTTCAAATTACAAAGTGGTGCGAAAACATCAAATCAAAGACATTATGAAGAGGTTTGATGTATATGTTCACAGTTGCAATTGATCTAGAATGTTTAATTGCTTTGAATACATTTCATGCCTAAGTTACAGTTTCCTTAAGGCAAGAAACAGATCGCACAGATGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489971 lncRNA upstream 75 14835326 ~ 14841734 (+) True G426740
TU489954 lncRNA upstream 84072 14757084 ~ 14757737 (+) True G426723
TU489879 lncRNA upstream 310386 14419115 ~ 14531423 (+) True G426649
TU489874 lncRNA upstream 402811 14434227 ~ 14438998 (+) True G426644
TU489913 lncRNA upstream 427178 14414370 ~ 14414631 (+) True G426683
TU490011 lncRNA downstream 788 14842872 ~ 14843078 (+) True G426778
TU490012 lncRNA downstream 1616 14843700 ~ 14843905 (+) True G426779
TU490013 lncRNA downstream 2133 14844217 ~ 14844455 (+) True G426780
TU490014 lncRNA downstream 2641 14844725 ~ 14844991 (+) True G426781
TU490017 lncRNA downstream 5528 14847612 ~ 14847848 (+) True G426784
CI01000304_14695603_14740389.mRNA mRNA upstream 100730 14695603 ~ 14741079 (+) True CI01000304_14695603_14740389
CI01000304_14356867_14373980.mRNA mRNA upstream 467143 14356586 ~ 14374666 (+) True CI01000304_14356867_14373980
CI01000304_14352375_14355516.mRNA mRNA upstream 486293 14352375 ~ 14355516 (+) True CI01000304_14352375_14355516
CI01000304_14331169_14331855.mRNA mRNA upstream 509836 14331064 ~ 14331973 (+) True CI01000304_14331169_14331855
CI01000304_14304022_14317252.mRNA mRNA upstream 523784 14304022 ~ 14318025 (+) False CI01000304_14304022_14317252
CI01000304_15034188_15038152.mRNA mRNA downstream 190133 15032217 ~ 15038498 (+) False CI01000304_15034188_15038152
CI01000304_15040739_15045239.mRNA mRNA downstream 198468 15040552 ~ 15045257 (+) True CI01000304_15040739_15045239
CI01000304_15047768_15063987.mRNA mRNA downstream 205684 15047768 ~ 15064170 (+) True CI01000304_15047768_15063987
CI01000304_15140709_15147357.mRNA mRNA downstream 298477 15140561 ~ 15147557 (+) True CI01000304_15140709_15147357
CI01000304_15148523_15151340.mRNA mRNA downstream 305750 15147834 ~ 15151395 (+) True CI01000304_15148523_15151340
TU489538 other upstream 510923 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 1262962 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 2402723 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU490061 other downstream 106806 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 1043370 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 1241146 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 1662778 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1913862 16755946 ~ 16761111 (+) True G428157

Expression Profile