RNA id: TU534400


Basic Information

Item Value
RNA id TU534400
length 2763
lncRNA type read_through
GC content 0.37
exon number 2
gene id G465566
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5415935 ~ 5475860 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTTCATAAGTTGTACCTTTTATTAAAAAACGTTAAAAAAGCTACAATGCTCATATAAAATGTTTATACTCTATACTAGTTTAAGATCATACAATAAAAAACATCCTCTTAGAATTGAAGTGAGACACAATGTTGAAGAAAACAATTATCAAAGTGTAATAACCTATAATTTGCACAAACATAGTTTATGCAAAACTTTACTTTCAGACAAAACCAAACAAAATATATTTAACAACTGGGGGAAATGTTGGGTAAAATAAAACCATCTCTTGTTGACTGATTCTGAAGTATAAAAAAAGAATACTGTACTAAATGCATTTTAAACACTTCATACATAGAAAGTGTGTTATGACACTTAATGCATAGAACTGGACAAATGCCTTCTCATTTTGAGGGGTCTAGAGGACTAATAGACAGATATACTTAAGCCATTCACCCATATTAAAACAGTTAACTTGCTTAAAATCAATACTTAAACCAATGATTGGTGCAAATCAACTTACAAAGCACTAATTCTGTGACCGATTTTCTATGAGCAAAAGGCTTTGGTCAATCAGTCCCCTAGAGTTAAAATGCCGCCCTGAGTTTGACCACAGCCAACACTCACCGTTTGCAGTAAATAAATTAAATAAATTAAGTCACAATACAGAATGGGTTGGCCCCATTATAATTCATTTGTTGATTAGGCAAAATATAAGAACTTTGACGTCTAACAAACAAAACCTACGGCTGAGCTGATTGACAGCCAACTGCAATCAAACCTTGAGAGGAAAAAAAAATACTTTGTGCAAATGAGCACATAAATGTAAAACATGCATCACTGTATGTATATTTGGTGCATTTTGCATACTGTAGTATTGAATTAAATTCCTTCAGTTTATGGATTTTGATAAACAGAAAAGTTGAGTTGTTGCACATAAGAATCTAATCTCTTCGTTTAAAATCAATTTGTAGAACATGTACATAATGTACAGTAACATATTACAAGAAAAATCTATTGTAGAAAATATATATTTATGTACACATTTTAGACAATCTTTTGTCTCCTTATGAAAATATCCCAAGCTTTACAACTTGTATACATCTTGTTCTGCTCTCTGTAGTGTCATGAGTATAACAAATAAATTAAATTAAAACAAAAAAACACCATGTCTGGACAGACAAATACAGAAAAAAATTATTAAAACATACAAAGGGTATGCAAATAATGACTATGGTCAGCTCATAAAATCAAGGCCATCCTTCACAAGACATCAACTCTTTTCCCTGAAAGGACTCCAGACTTTACTTGCTTTCCATAAGGAACAGAAAAGCCATTAACATTAAGACAAGCGTGTAAGTCTCTGAATAAGGTCTAACCTAAGAACCCACAATGATTTCCATGATGTGATCCAGTTCATTGAGATCAGAACGACAGTTTGGTGTGGACACTATGGAAGGGGAACCGTGTGAAGGTCCCAAGCTATCAAGGAGGTCATAAGGCCCCATCTTGGGTGCACTCTGCATACCGGTCAGCATGGTGTCCAGATCATAGTAGGAGGTGTCCACATCTGAAAATAGCTCCTCAAGAGCAGAGTCTGGACCCGGTGAACCGTTTTTTATTTCAAATGTCCCAAAAACTTGTCCAATGGTCTTTGGACCCTCAGTGGAAGCCTCATCCTCTGTGTCTATCTCCTCATCTTCTCCTGAACCAAGTCTAGAGTCTTCAAGGGCCTCTTCGTCCCTCTCTACGCCACTGAGCTCATTCTTCTCCCAGCACTGGCCTATACGGCCTGCCAGGCACACATTAGAAACAGTATCGCTAACTGAAACGGAGCACAGTGTCTCATCAGCTACCACCTCCTCTTCACGGCAACCTTCGTAGCTGATGACGGAAAAGAGCTTAGGTTCTGCATCCTGCTCCCGTGACCTGCAAAGGACCTCAGTGGCCACCAAACGCTCAGAGGGGCTCTGGCCTGCACCACAGAATGCTTCGGTGACCATATGCCAGCTGCCATCGTGGGTCATCTCCTCCTGAATCTGCCTGACCGTGTTGGCAATGAGAACCGAGCGGCAGAGGTTGGGCTCCACCAGCATGTGGCATAACTGCAGCTTAATGAGGGACATGTCCAGCAGCGACTGCCGTTGCAAGCTGTATGAGGATGCCACCCTGGCACCTACCAGGCCTTCGTCGGATATCTCTTCACCACCATCGGAAAATTTACGCTTAGTGCCCTTGGAGAACATGTTTTAGCCTACAGACAAAAAAAAAAAAAAAATAGGATAGCAATGGTCAGTTCACATTCATCCATTCCTGTTAAGTGAATCAAAGTCAATTCTGGTAATATCAGAACTATAATATAAAACCAATAGAAATGTCAATGACAAAAGATAAATTCAAAAAGCATTATTCTATGAAAATGCAGTGCATGAAGCCTAACAAAAACATACAAAACAAATCCACAGTGAAATTATTCTCTTAGGACACTTAAATAGAGTGTGTGTATATATAAAATAATGGATAATTAACTAATGTATGACTAAATACTTGCATATTAGAATAATGAATTCTATTCTAAATTTTATACCAGACCTTGGTAATTAGAGCCTAACAAATCTATGGATAAAAAAAATGATTTAGTCTAACTGAAAATTTATTCAATAGCAACAAACTCCTACACTTCAGAATATTTTTGAGGCCACAGATCACACCTTACATTCATGGTTAATCCACAGCCACCTAAAGTAAAAAAAAATGTTTTTTTTTTTTTTTTTTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU534499 lncRNA downstream 135228 5229636 ~ 5280707 (-) True G465647
TU534484 lncRNA downstream 230875 5183134 ~ 5185060 (-) False G465643
TU534494 lncRNA downstream 230875 5183134 ~ 5185060 (-) True G465643
TU534442 lncRNA downstream 392664 5021285 ~ 5023271 (-) True G465602
TU534384 lncRNA downstream 421523 4992176 ~ 4994412 (-) True G465555
TU534567 lncRNA upstream 35301 5511161 ~ 5511386 (-) True G465709
TU534568 lncRNA upstream 35825 5511685 ~ 5511928 (-) True G465710
TU534569 lncRNA upstream 39113 5514973 ~ 5515739 (-) False G465711
TU534570 lncRNA upstream 39113 5514973 ~ 5515784 (-) True G465711
TU534395 lncRNA upstream 44914 5520774 ~ 5530557 (-) True G465562
CI01000325_05382331_05383024.mRNA mRNA downstream 32911 5382050 ~ 5383024 (-) True CI01000325_05382331_05383024
CI01000325_05360218_05367885.mRNA mRNA downstream 47922 5359816 ~ 5368013 (-) True CI01000325_05360218_05367885
CI01000325_05334527_05357747.mRNA mRNA downstream 57173 5334527 ~ 5358762 (-) True CI01000325_05334527_05357747
CI01000325_05196396_05226419.mRNA mRNA downstream 189516 5196165 ~ 5226419 (-) True CI01000325_05196396_05226419
CI01000325_05177622_05178422.mRNA mRNA downstream 237513 5177611 ~ 5178422 (-) True CI01000325_05177622_05178422
CI01000325_05531464_05543064.mRNA mRNA upstream 55391 5531251 ~ 5543064 (-) False CI01000325_05531464_05543064
CI01000325_05572394_05599826.mRNA mRNA upstream 96522 5572382 ~ 5599826 (-) True CI01000325_05572394_05599826
CI01000325_05706302_05715899.mRNA mRNA upstream 230341 5706201 ~ 5715899 (-) True CI01000325_05706302_05715899
CI01000325_05746064_05750106.mRNA mRNA upstream 270204 5746064 ~ 5750106 (-) True CI01000325_05746064_05750106
CI01000325_05782613_05785408.mRNA mRNA upstream 306354 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
TU534264 other downstream 599857 4811313 ~ 4814260 (-) True G465464
TU533227 other downstream 1966757 3444730 ~ 3449178 (-) False G464576
TU533223 other downstream 1966757 3447987 ~ 3449178 (-) True G464576
TU532008 other downstream 3059332 2347744 ~ 2356603 (-) True G463451
TU530969 other downstream 4499145 916315 ~ 916790 (-) True G462516
TU534394 other upstream 44914 5520774 ~ 5527058 (-) True G465562
TU534579 other upstream 150353 5626213 ~ 5628168 (-) True G465716
TU536664 other upstream 2139626 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 2470485 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 3088770 8564630 ~ 8568433 (-) True G467737

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034522 False 2391 mRNA 0.40 3 NC_007131.7 26939857 ~ 26946248 (+)