RNA id: TU536089


Basic Information

Item Value
RNA id TU536089
length 232
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G467069
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 6085721 ~ 6085952 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGCTGTTTATTTACACGACAACGCCATTTTGGGTGCCTGAAAACGCAAGTTTTTTTTCAAAGTGCAAGTTTTTGAAATCGGTCTCCGTGTAAACAACAAAAATGCAAATCTGTGGAAACAATGACGTCATGCGCATGCATATAGAGTACCTCAGGGATGACGTGTTTTTGTAGGCCAACCCGGAAGTTAGCGGCGCACGGTTCCCTCGATCGAAAGCCAATGCATTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU536034 lncRNA downstream 136718 5948664 ~ 5949003 (-) True G467023
TU536036 lncRNA downstream 138722 5946483 ~ 5946999 (-) True G467025
TU536029 lncRNA downstream 149058 5936441 ~ 5936663 (-) True G467018
TU536028 lncRNA downstream 149759 5935612 ~ 5935962 (-) True G467017
TU534809 lncRNA downstream 191989 5893456 ~ 5893732 (-) True G465923
TU536091 lncRNA upstream 5021 6090973 ~ 6091233 (-) True G467071
TU536094 lncRNA upstream 14640 6100592 ~ 6100845 (-) True G467074
TU536095 lncRNA upstream 18010 6103962 ~ 6104203 (-) True G467075
TU536100 lncRNA upstream 29434 6115386 ~ 6115593 (-) True G467080
TU536102 lncRNA upstream 31673 6117625 ~ 6117944 (-) True G467082
CI01000325_06064671_06069495.mRNA mRNA downstream 16081 6063831 ~ 6069640 (-) True CI01000325_06064671_06069495
CI01000325_05991862_05992674.mRNA mRNA downstream 92988 5990127 ~ 5992733 (-) True CI01000325_05991862_05992674
CI01000325_05968651_05972436.mRNA mRNA downstream 112888 5966988 ~ 5972833 (-) True CI01000325_05968651_05972436
CI01000325_05787773_05791837.mRNA mRNA downstream 293884 5787603 ~ 5791837 (-) False CI01000325_05787773_05791837
CI01000325_05782613_05785408.mRNA mRNA downstream 299773 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
CI01000325_06279333_06313435.mRNA mRNA upstream 192282 6278234 ~ 6313506 (-) True CI01000325_06279333_06313435
CI01000325_06316580_06324054.mRNA mRNA upstream 230427 6316379 ~ 6324054 (-) True CI01000325_06316580_06324054
CI01000325_06344050_06345021.mRNA mRNA upstream 257632 6343584 ~ 6345351 (-) True CI01000325_06344050_06345021
CI01000325_06357210_06361020.mRNA mRNA upstream 271258 6357210 ~ 6361020 (-) True CI01000325_06357210_06361020
CI01000325_06401629_06421332.mRNA mRNA upstream 315677 6401629 ~ 6421332 (-) True CI01000325_06401629_06421332
TU534579 other downstream 457553 5626213 ~ 5628168 (-) True G465716
TU534394 other downstream 552879 5520774 ~ 5527058 (-) True G465562
TU534419 other downstream 650668 5434198 ~ 5435053 (-) True CI01000325_05430077_05434997
TU534264 other downstream 1269643 4811313 ~ 4814260 (-) True G465464
TU533223 other downstream 2636543 3447987 ~ 3449178 (-) True G464576
TU536664 other upstream 1529534 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 1860393 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 2478678 8564630 ~ 8568433 (-) True G467737
TU536859 other upstream 2593220 8679172 ~ 8697583 (-) True G467741
TU537690 other upstream 3199580 9287209 ~ 9287324 (-) True G468455

Expression Profile