RNA id: TU536029


Basic Information

Item Value
RNA id TU536029
length 223
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G467018
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 5936441 ~ 5936663 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCCAAAAAAGTTGGGACACTGTACAAATTGTGAATAAAAAAGGAATGCAGTGATGTGGAAGTTTCAAATTTCAATATTTTATTCAGAATACAACATAGATGACATATCAAATGTTTAAACTGAGAAAATGTATCATTTTAAGGGAAAAATAAGTTGATTTTAAATTTCATGGCATCAACACATCTCAAAAAAGTTGGGACAAGGCTATGTTTACCACTGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU536028 lncRNA downstream 479 5935612 ~ 5935962 (-) True G467017
TU534809 lncRNA downstream 42709 5893456 ~ 5893732 (-) True G465923
TU534742 lncRNA downstream 146595 5787763 ~ 5789846 (-) True CI01000325_05787773_05791837
TU534745 lncRNA downstream 166336 5768255 ~ 5770105 (-) True G465862
TU534734 lncRNA downstream 180968 5753958 ~ 5755473 (-) True G465851
TU536036 lncRNA upstream 9820 5946483 ~ 5946999 (-) True G467025
TU536034 lncRNA upstream 12001 5948664 ~ 5949003 (-) True G467023
TU536089 lncRNA upstream 149058 6085721 ~ 6085952 (-) True G467069
TU536091 lncRNA upstream 154310 6090973 ~ 6091233 (-) True G467071
TU536094 lncRNA upstream 163929 6100592 ~ 6100845 (-) True G467074
CI01000325_05787773_05791837.mRNA mRNA downstream 144604 5787603 ~ 5791837 (-) False CI01000325_05787773_05791837
CI01000325_05782613_05785408.mRNA mRNA downstream 150493 5782214 ~ 5785948 (-) True CI01000325_05782613_05785408
CI01000325_05746064_05750106.mRNA mRNA downstream 186335 5746064 ~ 5750106 (-) True CI01000325_05746064_05750106
CI01000325_05706302_05715899.mRNA mRNA downstream 220542 5706201 ~ 5715899 (-) True CI01000325_05706302_05715899
CI01000325_05572394_05599826.mRNA mRNA downstream 336615 5572382 ~ 5599826 (-) True CI01000325_05572394_05599826
CI01000325_05968651_05972436.mRNA mRNA upstream 30325 5966988 ~ 5972833 (-) True CI01000325_05968651_05972436
CI01000325_05991862_05992674.mRNA mRNA upstream 53464 5990127 ~ 5992733 (-) True CI01000325_05991862_05992674
CI01000325_06064671_06069495.mRNA mRNA upstream 127168 6063831 ~ 6069640 (-) True CI01000325_06064671_06069495
CI01000325_06279333_06313435.mRNA mRNA upstream 341571 6278234 ~ 6313506 (-) True CI01000325_06279333_06313435
CI01000325_06316580_06324054.mRNA mRNA upstream 379716 6316379 ~ 6324054 (-) True CI01000325_06316580_06324054
TU534579 other downstream 308273 5626213 ~ 5628168 (-) True G465716
TU534394 other downstream 403599 5520774 ~ 5527058 (-) True G465562
TU534419 other downstream 501388 5434198 ~ 5435053 (-) True CI01000325_05430077_05434997
TU534264 other downstream 1120363 4811313 ~ 4814260 (-) True G465464
TU533223 other downstream 2487263 3447987 ~ 3449178 (-) True G464576
TU536664 other upstream 1678823 7615486 ~ 7616830 (-) True G467570
TU536674 other upstream 2009682 7946345 ~ 7955192 (-) True G467578
TU536851 other upstream 2627967 8564630 ~ 8568433 (-) True G467737
TU536859 other upstream 2742509 8679172 ~ 8697583 (-) True G467741
TU537690 other upstream 3348869 9287209 ~ 9287324 (-) True G468455

Expression Profile