RNA id: CI01000344_01024079_01086671.mRNA


Basic Information

Item Value
RNA id CI01000344_01024079_01086671.mRNA
length 4535
RNA type mRNA
GC content 0.44
exon number 30
gene id CI01000344_01024079_01086671
representative False

Chromosome Information

Item Value
chromosome id CI01000344
NCBI id null
chromosome length 3248351
location 1023396 ~ 1086671 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACCGGGATGATTTGTCACTGGACAGCCGCAGGAGCAGCACTATCGTTGATAAGGAACCTAGTGAGTATCAAAGTTTTTTGACAACAGAAGTTACAAGTAACACACTCACACAGTCTGCATTTGTGTGTTTCACAGCCGGTGTCGCTGCCCAGAATGGACATGTTAGGAAAGGGGAGTCCAGAGGCTCTATATATGGAGATCCTGGCACTCCAGACGTCAATGAGTTACACAGGCGTGGCTCCACTATGAGCACTGGACCCGCCGCTGGCCGTTTGGGGCAGTATGAGGTCAGAGGGCTGCTTCTGTGTTACCTGCACATTGTAAGAACTTTGTCAGATGATACTCTGATGGCATACTGGTCTAAAGTCAATCCACAAGACGTCATGAACTTCCTCAGTCTGCTCGAGATCTGCATAGTCCAGTTCCGCTATATGGGAAAGCGAAACATCAGTCGGAGTCAGGAACCGTGGGTGTCGAAACTCTTTACCCCTGACAGGAAGTCTCAGACCATGCCGGTTCTGCGTAGCCGAGGAAGTCTTATGCAAGCAAAGCTGCAGCAGTTCAGCACTATGGACACCTCATTCACTCTGAACATGGTTGGAGGTCCCACAGAAGCAGAGACCAACCACCAGTCTTTGCTTGAGGGGAATATGTCGACAGAAGCCTGCCTTACCGTGCTGGATGTCCTCTCACTCTTCACTCAGAGCTTTAAGAATCAGCTGCTGGACAGCGATGGTCACAATGCTCTGATGACGAAGGTCTTTGACACATACCTCACTTTACTGAAAGTCGGACAATCAGAAGCAGCAATCAAACACATCTTTGCCTCTCTGCGAGCCTTTATCATCAAGTTCCAGGTTCCCCTTTTCAAGGGCCGCGTAACGCTGTGCGGTTCGCTGTGTTACGAAGTCTTGAAGTGCTGTATGTCTAAATTAAGTGTCCTACGTGGGGAGGCATCTGCCCTTCTTTACCTGCTCATGAAGAACAATTTTGAGTACACCAAGAGGAAAAGCTTCCTGCGCATGCACTTACAGATCATCATCGCTGTGAGCCAGCTTATTGCTGATGTGGCAGTAACCGGCAGCTCACGTTTCCAGGAGTCACTGTCCATCATCAACAACTTTGCCAACAGTGATAAAGTCATGAAGACCACAACGTTTCCATCTGAAGTGAAGGGTTTGACGATGAGAATTCGTACGGTTTTGATGGCCACCGCTCAGATGCGTGAGCACGAAAAAGACCCAGAAATGCTGCTTGACCTGCAGTACAGTCTCGCCAAATCATACGCCAGCACCCCGGAGCTCAGGCGGACCTGGCTGGACAGCATGGCACGAGCACACAGTAAGAATGGGGACTTTTCTGAGGCTGCTATGTGTAATGTTCATGTTGCTGCATTGGTGGCAGAGTATTTGCACAGGAAAAAGTTGTTCCCGAGTGGACTGGCAGCTTTTAAGAGAATCACCCAGAACATTGATGAAGAAGGAGCTATGAAAGAAGATGTAGGGATGCAAGATGTGTACTACACTGAGGATGTCCTGGTTGAGCAGTTGGAGGTGTGTGTTGAGAGTCTGTTAAAAGCTGAGAGGTTTGAACTCATAACACACATAGCGAGACTCATCATTCCTGTTTACGAGAAACGGCATGAGTTTGAGAAACTGAGGAGATTGTATGACACACTGCAGCGAGCTTACACCAAAATATTAGAGGTGATGCAGTCTGGTCGACGTCTGCTCGGGACTTACTTTAGAGTCGCCTTTTATGGACAGGGCTTCTTTGAAGAAGAGGATGGAAAAGAATACATCTACAAAGAGCCAAAGCTCACAAAGCTTCCCGAAATTTCCCATCGTCTTATAGGCCTCTACGGAGAAAAGTTTGGAGCAGAGAATGTCAAAATCATTCAGGACTCCAACAAAGTTAACCAGAAAGAACTGGACCCAAAGTTGGCCTACATTCAGGTCACGTATGTCAAGCCTTACTTTGATGAGAAAGAACTGGTGGAGAGGAAGACAGACTTTGAGAAATGCCACAACATTCAGCGCTTTGTTTTTGAGACTCCATTCACACTAACAGGAAAGAAACAAGGAGGGGTTGAGGAACAGTGCAAGCGGCGGACGATACTTACCACAGCCAACACATTTCCCTATGTAAAGAAGCGCATCGAGGTAGTGGCAGAGAAGCACTTGGAGCTTAAACCGATTGATGTGGCAATAGATGAGATGAAAGAGAAGAGTACTGAACTCGCTAAGCTCTGCTCTAATCAGGAGGTTAACATGATCACGCTTCAACTCAAACTCCAAGGCTGTGTTAGTGTGCAGGTGAACGCTGGACCGATGGCCTATGCCCGAGCTTTCCTGGATGAATCCAAATCAGGTCAATCCAATAAGAAAGTCAAGGAGCTCAAAGAAATATTCAGTATGGCTCTGGACATTAATGAGAGACTCATTAAGGAGGATCAGTATGAGTATCATGAGGGACTAAAGGCTAACTTCAAAAGCATGGTTAAAGAACTTTCTGAGATCATCCACGAGCCGCTATGTGGCAGGGTGGCAAAATGCAAGCTTTTTCTGACTAAAGGCAGGCGTACACTGTACGAGTTTGGACACTCGGGAGATTGTGAGCCATTGCACACGTCACGACTCCTTAACCTGATAATCGTGTCAAAGCAGCTGGCGCCCCTGGTTCTGGTGGATGAAGGGCCCCCTCAAGAGAATCTGACCTTTATATGGGAAACACCTTTCCGGCTTAGTTTGACATGGGAAAAGCCTGAGGATTTGGATCGTAGCTGTATAGTGAACTACACGGTAAATGTGCATCATTCACAGGAATGTTCAGGAAAATATGATTCCAGAAGAGTCCAAGCCCTGGGTTGTAAATTAAATATCTCCAATGAGAAAGGACTGTGCATCAGTGTTACAACAAACCTTGAAAACTGTGGAAAAAGTGGCAGTAGTCAAGCGACGAACATTAGCATAGCTCCACCTTCAGTGGCTTTTGTCAAATATGCAGTTAAACAAGTATTTAGATGTCTAATTAAATGTCAGACTTACTTCCATGAACACCGCAAATTTTTGCAAATCAAGCAAGATGTCAAACCCTTCTGCAACTGGCTACCTCGTTATGAATCAGTAAAAAAGTGTATACCTGATGAGACGTTGAAGCCCAGAGGATGTATCATACACGATGAATTTCTCAAGGACACGTTGGACATATTCTATCTGTTCAACGGCACTTACAATGGTACTTCTGTATTCAACACGTTCACGGATGAACGTCCAGTAAAATACGTGAAACTAAATAAACCTCAACTTACAATCCATAAAGACCGACAAAAACTCATTTTTCAAGCAAATGGATCAGATTTAGATGAGTTTGCAAAGGAATGCTACAGTTACATCTACACAATCAGCAAGTGCAATAAGAATAGTACTGTAAAGGACAAAGAACATTATGAGGTGCAGTATGACCCAGCCTGCAAGTACAGAGCCAGAGTGCAGGTCGACTTCTCACAGAAATGTGGTGCCGGGAAAAGTGATCTGAGTGACGAGGTGGAATATGGAGAGGACAGCGATCCGAAATTGCCTGCATTGCTGGCTGTCATTATAATCCCGCTCATAGTTTCCCTTTGCCTGTTAGTCTCTCTAGTGCTGCTCAGAAGACATAAAGACATCATATTCCCACAAATCCCAGAGCCATCGCTTCTCTTTAAGGACATGCTCATCAACAACATCAGAACCCCAGAGGAACTACAGAGCTCCCTCTACTGGCAGTCCGCGGAGATCCAAAATGGCGGCAGTGTGGTCCTGATGCTGCTGGATGCTGATGAAGGCTTACGCCGTGCAGTGTGTCTCTAAAGCGGGTCTGATCGATTTTTATTGGCTCGGTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAGTCCCGGCAGAGATGCAGTGCAGCTCTTGGATGGAGCATGTTAATTGTTTTTATAGTGCCTTTTGTGCACTTCAACGTTATAAGTGTAATAGCTTAAGGCAGATTTGTATCTTTGTGCTTTGATCAAAAGCATGCAGAATAATGTAAGTAATGTAAACCCTGAAAACCGAGATGATGTTGAAGAATTTTACATGGACTGATTAATTGAACAAATATTCACTATACTACAATTACAAATTGCATCAACTGTTTTGATTGGTGTGAGTTTGAAAAAACAACAACTAATATTTGCTAAATAATTTATATATATATATATATATATATATATATATATATGTAATTATCTTTCTCTTTGTCACATGCACACACAGGTTCACAGGTTAACCGAATGGTTAGTGATCTAAAATGAGTTTAAGTGAAATTGCTTTTAATATTATGGCCATGATAATGTTATATATTACTATTCTAACACCCAATATTTCTTCACTCAATCCCTTCACAATATGCACATTTAATGCCTTTATTTTAATGCCATAACACATTTCTCGTAATGCCATGTTATTAATTTTATTAGAAAGAATTGTAATACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573181 lncRNA downstream 3247 998133 ~ 1020149 (-) True CI01000344_00982486_01019957
TU573269 lncRNA downstream 85047 937965 ~ 938349 (-) True G499755
TU573248 lncRNA downstream 117685 905479 ~ 905711 (-) True G499735
TU573227 lncRNA downstream 134704 888158 ~ 888692 (-) True G499720
TU573223 lncRNA downstream 135388 883434 ~ 888008 (-) True G499716
TU573294 lncRNA upstream 80518 1167189 ~ 1168443 (-) True G499779
TU573205 lncRNA upstream 120453 1207124 ~ 1208007 (-) True G499701
TU573165 lncRNA upstream 123196 1209867 ~ 1210455 (-) False G499666
TU573167 lncRNA upstream 123196 1209867 ~ 1210455 (-) True G499666
TU573298 lncRNA upstream 130334 1217005 ~ 1217275 (-) True G499782
CI01000344_00982486_01019957.mRNA mRNA downstream 3362 982228 ~ 1020034 (-) False CI01000344_00982486_01019957
CI01000344_00960146_00977733.mRNA mRNA downstream 43944 960027 ~ 979452 (-) True CI01000344_00960146_00977733
CI01000344_00954563_00959583.mRNA mRNA downstream 63548 954180 ~ 959848 (-) False CI01000344_00954563_00959583
CI01000344_00911013_00918153.mRNA mRNA downstream 104981 909649 ~ 918415 (-) True CI01000344_00911013_00918153
CI01000344_00835930_00838758.mRNA mRNA downstream 184638 835815 ~ 838758 (-) True CI01000344_00835930_00838758
CI01000344_01148037_01163418.mRNA mRNA upstream 61064 1147735 ~ 1163418 (-) True CI01000344_01148037_01163418
CI01000344_01178860_01181710.mRNA mRNA upstream 92189 1178860 ~ 1182338 (-) True CI01000344_01178860_01181710
CI01000344_01224910_01235323.mRNA mRNA upstream 137893 1224564 ~ 1235323 (-) True CI01000344_01224910_01235323
CI01000344_01243421_01244832.mRNA mRNA upstream 156504 1243175 ~ 1244872 (-) True CI01000344_01243421_01244832
CI01000344_01274460_01279238.mRNA mRNA upstream 187789 1274460 ~ 1279516 (-) True CI01000344_01274460_01279238
TU573163 other downstream 63704 957149 ~ 957187 (-) True G499664
TU573086 other downstream 355250 651860 ~ 668146 (-) True G499601
TU572974 other downstream 683531 337073 ~ 339865 (-) True G499520
TU573190 other upstream 82438 1169109 ~ 1172991 (-) True G499686
TU573195 other upstream 149110 1235781 ~ 1240682 (-) True G499691
TU573324 other upstream 327345 1414016 ~ 1419068 (-) True G499804
TU573330 other upstream 335680 1422351 ~ 1423174 (-) True G499807
TU573489 other upstream 719989 1815542 ~ 1815948 (-) True G499918

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067436 True 6209 mRNA 0.49 52 NC_007118.7 19183451 ~ 19332421 (-)
rainbow trout (Oncorhynchus mykiss) trnar-ucu-121 True 74 mRNA 0.59 1 NC_048592.1 1642138 ~ 1642211 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_685 True 74 tRNA 0.59 1 NC_053125.1 7837221 ~ 7837294 (-)
bowfin (Amia calva) AMCG00021215 True 5715 mRNA 0.46 48 CM030130.1 9390527 ~ 9455880 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_685 True 74 tRNA 0.57 1 NC_056702.1 26262920 ~ 26262993 (-)