RNA id: TCONS_00067436


Basic Information

Item Value
RNA id TCONS_00067436
length 6209
RNA type mRNA
GC content 0.49
exon number 52
gene id XLOC_034638
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19179819 ~ 19332421 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATGAGGCCCCGCCCCACACGCCTGCATCCGCACCTCTGTCAGCCGCGCAGATTGGCGTGCCGCGATGTTGCTTTCTGTAATGAGGACGCTGATGGAATTACGGTCAAACTAACGAGGGAATAAAACATGTCCGAAGTACGAAAATTCACGAAGAGGTTAAGCAAACCTGGGACGGCAGCAGAGCTCAGACAAAGTGTGTCCGAGGCGGTGAGGACGTCCATTGCTGTGgagcagCCGAAGATCATTGAGCCTCTGGACTATGAGAATGTGGTGTTTCAGAGGAAAGCTCAAATCCACAGTGACCCACAGAGAGACCTGCTGCTGTGGCCAGCTGATGACGTATCAGAGGCACACATTGATCGTCACAGGAGAACCATCAATCCTTCAGTTCCTCAAAATGCTGAGAACGAAGCTAAAAGCCTGTTCGCCAAAGAGTGTATTAAGATGTACAACACCAACTGGCATGTCATCAACTATAATTACGAAGCCTATTCGGGAGATTTCCGGATGCTGCCCTGTAAAGGGATGAAGACGGAAAAGCTTCCCAGCCAAGTGTTTGAGGTGGATGAGGGGGAGGAGgattcGTCATCTCTCTGCTCTCAGAGAGGAGGTGTGATGAAGCAGGGCTGGCTGCAGAAGGCCAACATCAACAGTTCTTTGTCTGTTTCCATGAAGGTGTTCAAGAGGAGATATTTCTACCTGTCTCAGCTCCCTGATGGCTCCTACATACTAAATTCATACAAAGATGAGAAGAACTACAAAGAATCAAAAGGCTCAATCTATCTGGATTCCTGTATAGATGTAGTTCCGTGCCCTAAAATGCGGCGCAATGGCTTCGAGCTGAAGATGCAGGAGCGCTACAGTCACTATCTGGCGGCCGACAGCGAGGCTGAGATGGAGGACTGGGTGAACACGATAAAACAGGCCTTACTCAGCACAATGGAGGACCGGAGGAATGGCTCAGAAACGTCTGAAGGGTCTCTGGATGACGACAGCAGTAGTCAGGGGAAACCAGAGAGCATCACCGAGAGCTTCGGCCGGAGTCTTCATCCTGAGCTGATGAAGTATGCTAGAGAAACTGACCAGCTGAGTAAAATGAGCAGGAATGAGGGCCGACAGAAGATCTTCTCCCTCGATCCTGAGGTGCAGAGATTGGATTTCTCAGGCATCGAGCCTGACGTGAAGCCATTTGAAGAACGATTTGGCCGAAGAATCATGGTCAGTTGTCACAACTTGACCTTTAATCTGCAAGGATGCGTCAGTGAGAAGAATGACGGTGTCTTGACCAATGTGGAGCCGTTCTTCATCAGCCTGGCGTTGTTCGATCTGTCCAAAGGCTGTAAGATCTCGGCAGACTTTCACGTTGACCTCAACCCTCCCTGCGTGAGGGAAATGATTCAGACGGGCTCTGCTGGAACGCCGACAGAAGCAGGAGAAGATGAAAACGACCCAGTCAAGATGAACGGACATGGCCTGCCGCTTCTCCAGAGAGTCGCAGAGTCTCTTTTACACTTCCCCACTCAGGGTATTTTCTCCGTCACAAACCCTCACGCTGACATCTTCCTGTTGGCCCGAGTGGAGAAGGTTTTGCAGAACGGCATCACTCATTGCGCTGATCCCTACATCAAGCCCTCCGACATCAGCAAGACGGTACAGAAAGTGTTGAAGACTGCCAAGCAGACATGCCAACGGCTGGGCCAATACCGGATGCCTTTCGCTTGGGCTGCCAAGCAGGTGTTTAAAGATTCCCAAGGCACTTTAGACACGGATGGCAAATTTTCTCCACTCTACCGTCAAGACAGTAGCAAGATATCAACAGAAGACCTCATCAAACTGTTGACAGATCTCAAGAAACCAGAGAAGAACAAACTGCAGATAATCCCTGGACAAATTAACATCACTGTTGAATGTGTACCTCCAGACTTGTCAAACTCTGTCACATCGTCTTACATTCCCGTAAAGCCATTTGCGGATCAGTGTGACAGCGTGTCGGTGGAAGTGGAGGAATTTGTCCCGGAAGAGGCTCGATTCAACCACCCGTTCACCATCTACAACAACCACCTCTACATCTATCCTCAGCAGCTCAAATATGACAGTCAGAAGGCCTTCGACAAAGCTCGAAACATTGCAGTGTGTGTTCAATTCAAGGATTCTGATGAGGAGGGATCAAGCCCACTAAAGTGCATCTACGGCAAGCCAGGGGATCCACTATTCACCACCAGTGCTTTTGCTGCAGTTTTGCATCACAATCAATCTCCAGAGTTTTATGACGAGATAAAAATTGAGCTTCCTGTGCATATCCATGAGAAGCACCATATTCTCTTTACTTTTTACCATATCAGTTGTGACCTTGGCACCAAAACCACCAGTAAGAAGAGAGAAGGAGTGGAGACACTGGTGGGTTACTCCTGGACTCCATTATTAAAGGATGGCAGAATAAAGTCCTCGGATCTGCAGCTCCCTGTTTCTGCCAATCTGCTCGCTGGTTACTTGTGTGACAAAAGCCAAGACATAAAAAAGgtTTTTCCATACATCAAATGGGTGGATAACGCCAAACCTTTATTTAAAGTGCGGGCGTATGTAGCATCAACAATTTACACTCAGGATTTGCACCTTCACAATTTCTTCCAGCACTGTCAGCTGATGAGATCAACATCACAGGGCAATCCTGCTGAACTCATCAAATATCTAAAGTGCCTGCATGCGGTTGAGACTCAGGTTGTCATCAAGTTTCTTCCTACGGTTCTCGTTCAACTCTTTGAAGTCCTTAGTATGGCAAGCAAAGAGGGTCAAGATGTTGCCGTCAACTCCACACGTGTAATCATTCACATTGTGTCTCAGTGTCATGAAGAGGGTCTGGAGCATTACCTGCGCTCTTTTTTGAAGTATGTGTTTCGTATCAACAACGCAACTTCCGAAAACTCTGTGACAACACATGAAGTTTTGGCTACGGCTGTGACTGTCATCCTCAAACAAACCGCTGATATCAACACCTGCAACAAACTTCTCAAGTATTCCTGGTTCTTCTTTGAGACCATGGCCAGGTCAATGGCTCAATACCTCATGGATGGCAACAGAATGAAAATGCCACGAGCACAGAGGTTTCCAGAGTCTTTCCAGCAGGCCCTGCAGTGTCTGCTGTTGTCCATAATGCCACACATCACTATCCGCTATGTGGAGATTCCAGAGGAGGCTCGCTGTGTCAACTTCAGCCTGGCCTGCTTCATTAAGGTGCTTACGGAGATGAAGTTCGACTTCCTCATGACGGTCTGCAACCATGAGCACTACATTCCTCTGAATCTGCCCATGGCGTTCGGCCGGACCAAACTGCAGCGGGTCCAGGATCAGAGTCTGGAGTACAGCTTGACTGAAGATTACTGCAAGAATCATTTTCTGGTGGGTTTGCTTCTGCGCGAGGTGGCTGATGGACTTCAGGCCTGCCCAGAGATTAGACAGCTGGCTGTGGCTGTGCTTAAAAATCTCATGATCAAACACGCCATGGATGACCGGTACAATGCCTTTAAGAACCAACAGGCCCGCATCTGCCTGCTGTACCTGCCTCTGTTTGAGCTGCTCTACCAGAACCTGAGTCAGATGAACAGCCCCAGACAGATGTGCAGGAATGGCCTCGGCCTGATGTACCGTGATGATTTGTCAGTGGACAGTCGGAGAAGCAGCACCATTGTTGATAAGGAACCTTCCGGTTCTGTCACCCAGAATGGACTCAGTAGGAGAGGAGAGTCCAGAGGCTCCATGTATGGAGATCCGGGAACTCCAGACATCAATGAGTTGCACAGGCGTGGTTCCACTATGAGCACTGTACCTGCTGCTGGACGTTTGGGCCAATATGAAATCAGAGGGCTGCTGCTGTGTTACCTGCACATCGTAAGAACTTTGTCAGATGACACTCTCACTGCTTATTGGTCGAAAGTCAATCCACAGGACATCATGAACTTCCTCAGTCTTCTCGAGATCTGCATAATCCAGTTCCGCTATGTGGGCAGGCGAAACATCAGCCGAAGCCAGGAGCCGTGGGTGTCAAAACTCTTCTCCCCTGAGAGAAAATCTCAGACCATGCCGGTTCTGCGAGGACGAGCCAGCTTAATGCAGGCCAAGCTGCAGCAGTTCAGCACTATGGACACCTCATTGACTCTGAACATGGCTGGAGGTCCCACAGAAGCAGAGATCAATCATCAGTCTTTGCTGGAGGGCAATACGTCGACGGAGGTCTGTCTGACAGTGCTGGACGTCCTCTCTCTTTTCACTCAGAGCTTCAAGAATCAGCTGCTGGACAGTGATGGTCACAACGCTCTGATGACGAAGATCTTTGACACATACCTCACTTTACTGAAAGTCGGACAATCAGAAACCGCAATCAAACACATCTTTGCCTCTCTGCGAGCTTTTATCGTCAAGTTCCAGGTTCCCCTTTTTAAAGGCCGTGTAGTGCTATGCGGCTCGCTGTGTTATGAGGTCTTGAAGTGCTGTATGTCAAAACTAAGTGTCCTGCGAGGGGAGGCGTCTGCCCTTCTTTACCTGCTCATGAGACACAATTTTGACTACACAAAGAGGAAGAGCTTTCTGCGTGTGCATTTACAGATTATCATCGCAGTGAGTCAGCTTATCGCTGATGTGGCGCTAACCGGCAGCTCGCGTTTCCAGGAGTCACTCTCCATCATCAACAACTTCGCCAACAGTGATAAAATTATGAAGACCACAACATTTCCATCAGAAGTGAAGGGCCTGACCATGCGGATACGTACAGTGCTGATGGCCACAGCTCAGATGCGCGAGCATGAAAAAGACCCAGAAATGCTGCTCGACCTGCAGTACAGTCTCGCCCGATCCTATGCCAGCACTCCAGAGCTCAGACGGACCTGGCTTGACAGCATGGCACGAGCGCACAGCAAGAACGGGGACTTTTCTGAGGCTGCCATGTGTAATGTTCATGTTGCCGCTTTAATGGCAGAGTATTTGCACAGGAAAAAGCTATTCCCCAGTGGACTGGCAGCTTTTAAGAGAACCACTCAGAACATTGATGAGGAAGGAGCCATGAAAGAAGACATCGGCATGCAAGATGTGTACTACACTGAGGACGTCCTGGTGGAGCAATTGGAGGTGTGTGTGGAGAGTCTGTGGAAAGCTGAGAGGTTTGAGCTCATAACACACATCGCCAGACTCATCATTCCGGTTTATGAAAAGCGACACGAGTTTGAGAAACTGAGGCGATTGTACGACACACTGCAGCGAGCTTATGCAAAGATATTGGAGGTGATGCAGTCGGGTCGACGGCTGCTCGGAACGTATTTTAGAGTCGCCTTTTTCGGACAGGGCTTTTTTGAAGAAGAGGATGGAAAGGAGTACATCTACAAAGAGCCAAAACTCACAACTCTGCCTGAAATTTCCCATCGTCTCTTAAAGCTCTATGGAGAAAAGTTTGGCTCAGAGAACGTCAAAATCATCCAAGACTCCAACAAAGTTAACCAGAAAGATCTGGACTCGAAGTTTGCGTATATTCAGGTCACGTATGTCAAGCCGTTCTTCGATGAGAAGGAAATGGCTGAGAGGAAGACGGACTTCGAGAAGTGCCACAACATTCAGCGTTTCGTCTTCGAGACTCCATTTACGCTCACAGGGAAGAAACAAGGAGGAGTTGAAGAACAGTGCAAGCGGAGGACTGTACTTACCACCGCCAACACATTTCCCTATGTAAAGAAGCGCATCGAGGTGGTGGGAGAGAAGCACACAGAGCTGAAACCCATCGATGTGGCCATAGACGAGATGAAGGAGAAAAGTTCTGAACTCGCTAAACTCTGCTCTAATCAGGAGGTCAACATGATCACACTTCAGCTCAAACTGCAGGGCTGTGTTAGTGTTCAGGTGAACGCAGGACCGATGGCCTATGCTCGAGCTTTCCTAGATGAGTCCAAATCAGGTCAATCCAACAAGAAAGTCAAGGATCTCAAGGAAATATTCAGGCAGTTTGTCAATGCTTGCAGTATGGCTCTGGACATCAATGAGAGGCTCATTAAAGAGGATCAGTATGAATACCATGAAGGACTGAAGGCGAACTTTAAAAGCATGGTGAAAGAGCTTTCTGAGATCATCCACGAGCAGATCTTCCAAGAGGATATGATGCGTTCTCTGCTCCAGAACTCTCTCCATGTGTTCAGAGCCATCAGTGGAACCTCCACCGACCTCAGCTAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-196 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human DOCK11 (dedicator of cytokinesis 11).

Ensembl:

ensembl_id ENSDART00000090406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067428 lncRNA downstream 153914 19028827 ~ 19029537 (-) True XLOC_034633
TCONS_00069174 lncRNA downstream 167564 19007755 ~ 19015887 (-) True XLOC_034632
TCONS_00067427 lncRNA downstream 179918 18990918 ~ 19003533 (-) True XLOC_034631
TCONS_00069173 lncRNA downstream 263466 18915542 ~ 18919985 (-) True XLOC_034630
TCONS_00069172 lncRNA downstream 372603 18780376 ~ 18810848 (-) False XLOC_034629
TCONS_00069175 lncRNA upstream 167559 19499980 ~ 19505267 (-) True XLOC_034641
TCONS_00067445 lncRNA upstream 274481 19606902 ~ 19612822 (-) True XLOC_034645
TCONS_00067452 lncRNA upstream 582487 19914908 ~ 19923228 (-) True XLOC_034649
TCONS_00069176 lncRNA upstream 712966 20045387 ~ 20050778 (-) False XLOC_034654
TCONS_00069177 lncRNA upstream 712966 20045387 ~ 20050795 (-) True XLOC_034654
TCONS_00067433 mRNA downstream 15076 19153320 ~ 19168375 (-) True XLOC_034637
TCONS_00067432 mRNA downstream 36525 19070469 ~ 19146926 (-) True XLOC_034636
TCONS_00067431 mRNA downstream 36526 19070464 ~ 19146925 (-) False XLOC_034636
TCONS_00067430 mRNA downstream 114912 19043750 ~ 19068539 (-) True XLOC_034635
TCONS_00067429 mRNA downstream 140050 19033883 ~ 19043401 (-) True XLOC_034634
TCONS_00067437 mRNA upstream 1893 19334314 ~ 19369002 (-) False XLOC_034639
TCONS_00067438 mRNA upstream 10979 19343400 ~ 19364813 (-) True XLOC_034639
TCONS_00067439 mRNA upstream 64708 19397129 ~ 19420334 (-) True XLOC_034640
TCONS_00067440 mRNA upstream 177467 19509888 ~ 19526721 (-) True XLOC_034642
TCONS_00067441 mRNA upstream 206004 19538425 ~ 19544575 (-) False XLOC_034643
TCONS_00067426 other downstream 355478 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 614118 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 935760 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 1320911 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067385 other downstream 1537701 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067455 other upstream 623657 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067492 other upstream 2490942 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 2498265 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 2504255 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 3604708 22937129 ~ 22937248 (-) True XLOC_034690

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_01024079_01086671.mRNA False 4535 mRNA 0.44 30 CI01000344 1023396 ~ 1086671 (-)
rainbow trout (Oncorhynchus mykiss) LOC110532966 True 5757 mRNA 0.52 46 NC_048573.1 19616135 ~ 19704178 (+)