RNA id: TCONS_00067429


Basic Information

Item Value
RNA id TCONS_00067429
length 491
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_034634
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19033883 ~ 19043401 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGCTCGAGCGAAGCCCAAGTGTGTGTTGTCTGTGGTGGTGCTGCTGCTGATGGTGGTGCTGATGAAGATCTTCTCTCTTCTGTCTCTCTGGTTTTTCGGCAGTGCTGATGCGATGAGTCTGAGGGAGCCGCAGATCTGCTATATTTTGGACGCGGTGCTGTTTGTCTATGGGATTGTTCTCACTGTCCTGTACTGCAGAATGAAGATGCGAAGTAAACAAGAACCAAAAAGCTCATATTCAGGGAAGAAAGATGCCGGTGAAGGGGTGTATGAGGGGCTCAAACCTCATGAAACGGACACATACGAGACCATCAAGATGAAATCCGCCAAAAAATGAGACTCGCCACCAGAAGAAAAAAGCCACCATCATCTCAAAACATCATGTAAATAAGCTGTTGACCTTAAGAAAAGGGTTTAAAGAGATTGttccaaaataatataaatgttttatgaaaAATGTTGGAGTCATTGACTTTGGTAGCTGGAGAC

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0032998 Fc-epsilon receptor I complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019767 IgE receptor activity molecular_function

KEGG:

id description
ko04072 Phospholipase D signaling pathway
ko04071 Sphingolipid signaling pathway
ko04611 Platelet activation
ko04625 C-type lectin receptor signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04664 Fc epsilon RI signaling pathway
ko05152 Tuberculosis
ko05310 Asthma
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-061130-3 Predicted to enable IgE receptor activity. Predicted to act upstream of or within cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of Fc-epsilon receptor I complex. Is expressed in head; immune system; liver; myeloid cell; and pleuroperitoneal region. Orthologous to human FCER1G (Fc fragment of IgE receptor Ig).

Ensembl:

ensembl_id ENSDART00000158796

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067428 lncRNA downstream 4346 19028827 ~ 19029537 (-) True XLOC_034633
TCONS_00069174 lncRNA downstream 17996 19007755 ~ 19015887 (-) True XLOC_034632
TCONS_00067427 lncRNA downstream 30350 18990918 ~ 19003533 (-) True XLOC_034631
TCONS_00069173 lncRNA downstream 113898 18915542 ~ 18919985 (-) True XLOC_034630
TCONS_00069172 lncRNA downstream 223035 18780376 ~ 18810848 (-) False XLOC_034629
TCONS_00069175 lncRNA upstream 456579 19499980 ~ 19505267 (-) True XLOC_034641
TCONS_00067445 lncRNA upstream 563501 19606902 ~ 19612822 (-) True XLOC_034645
TCONS_00067452 lncRNA upstream 871507 19914908 ~ 19923228 (-) True XLOC_034649
TCONS_00069176 lncRNA upstream 1001986 20045387 ~ 20050778 (-) False XLOC_034654
TCONS_00069177 lncRNA upstream 1001986 20045387 ~ 20050795 (-) True XLOC_034654
TCONS_00067424 mRNA downstream 152525 18779555 ~ 18881358 (-) False XLOC_034629
TCONS_00067425 mRNA downstream 156774 18811167 ~ 18877109 (-) False XLOC_034629
TCONS_00067423 mRNA downstream 303409 18721547 ~ 18730474 (-) True XLOC_034627
TCONS_00067421 mRNA downstream 321340 18708412 ~ 18712543 (-) False XLOC_034626
TCONS_00067419 mRNA downstream 321344 18705113 ~ 18712539 (-) False XLOC_034626
TCONS_00067430 mRNA upstream 349 19043750 ~ 19068539 (-) True XLOC_034635
TCONS_00067431 mRNA upstream 27063 19070464 ~ 19146925 (-) False XLOC_034636
TCONS_00067432 mRNA upstream 27068 19070469 ~ 19146926 (-) True XLOC_034636
TCONS_00067433 mRNA upstream 109919 19153320 ~ 19168375 (-) True XLOC_034637
TCONS_00067434 mRNA upstream 136418 19179819 ~ 19332293 (-) False XLOC_034638
TCONS_00067426 other downstream 205910 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 464550 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 786192 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 1171343 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067385 other downstream 1388133 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067455 other upstream 912677 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067492 other upstream 2779962 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 2787285 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 2793275 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 3893728 22937129 ~ 22937248 (-) True XLOC_034690

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU573163 True 39 TUCP 0.38 1 CI01000344 957149 ~ 957187 (-)