RNA id: TCONS_00067432


Basic Information

Item Value
RNA id TCONS_00067432
length 4955
RNA type mRNA
GC content 0.48
exon number 16
gene id XLOC_034636
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19070464 ~ 19146926 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACGCAAGAGAGGAGGGCAGAAGAGGGAACGGCTGAAGAAAAAAGCCACCAGAAATGCGTTAAAAAGTAGCAAAGGCGGGAGAACAGGGGCAGCGCACGGCCAACACGTGAATGGAAGGATTATAATCCATCGTTTGGAGGGATTTGACGCTCCCCATGCGGAGACTTGAACCATGCAGGGTCTGCTGCTGCTTCTGAGTTTGGCGTTGAGTTTTCACAGAGTGCGGACGGCACGGTTCTCTCAGGAGCCTGCAGACCAGTCAGTGGTGTTGGGCCAGAGGGTGGTCCTGTCCTGCGTGGTCTTCAACTATTCAGGCATTGTGCAGTGGACCAAGGATGGACTGGCCCTAGGCATTGGAGAAGACCTGCGGGCCTGGCCGCGGTATCGTGTGTTAAGGCTGGTGGATGTTGGGCAGTATAATCTGGAGATCTCAGCTGCGGAACTCTCAGACGACTCTCTCTATGAGTGCCAGGCCACTGAGGCTGCGCTGCGCTCGCGACGGGCCAAACTCACCGTCCTCATTCCTCCTGATGAGCCAGTGATTGAGGGCTCCCCGGAGATCCTCCTCACAGCAGGGGTTCCCTACAACATGAGCTGCGTGTCCCGCGGAGCCAAACCAGCCTCGGTCATAGAGTGGCAGAAAGACGGCCTGCCGATAGAAGGGGCTGTCAGCACTacgGAGGTTCTTCCGGACAGGAAACGCGTGACTACACGTAGTTACCTCCCCATTCAACCTCTAGATACAGACACAGGGAAGAACTTCACCTGTGTGGCGACAAACCTGGCTGTTCCAATGGGCAAACGGGCCACCATCACCCTCAACGTACATCACCCACCAGTGGTGACGTTATCCATCGAGCCTCGTTCCGTACTGGAAGGAGAGAGAGTGACCTTCACCTGCCAAGCTACTGCCAACCCACCTATTATGGGTTATAAGTGGGCAAAGGGTGGTGTGGTCATACAGGGGGCGAGAGAGAGTGTTTTTGTCACCAAGGCTGATCACTCTTTCTTCACTGAGCCGGTGTCCTGCCAAGTGTTCAATGCTGTGGGCAGCACAAACGTCAGTATACTCGTTGATGTCCACTTTGGTCCTATCCTGGTCGTAGAGCCTAAACCAGTAACAGTGGATGTCGACTCAGATGTCACTTTAAATTGCAAGTGGGCAGGAAATCCTCCGCTCACACTCACCTGGACAAAAAAGGGTTCGAGCATGGTTTTGAGTAATAATAACCAGCTGTATCTGAAGTCAGTAAGTCAGGCCGATGCCGGTCAGTATGTGTGTAAGGCCATCGTGCCGAGGATCGGAGTGGGCGAAACAGAGGTCACACTCACAGTCAACGGTCCACCCATCATCTCTAGTGAACCGTTCCAGTATGCAGTTCGAGGGGAGAGAGGAGAAGTCAAGTGTTACATCGCCAGCACACCTCCACCTGACAAGATTgTGTGGGCCTGGAAGGAGAATGTGTGGGAGAAAGAAAAGGGGACCCTGTCAGAAAGATACACCGTAGAGCAGAGCAAACCGAGCGCACAGGGCGGCGCAGTTCTGTCCACACTCACCATCAACAACATCATGGAGTCCGACTTCCAGTCCACCTACAACTGCACTGCATGGAACTCATTCGGATCTGGCACCATGATCATCTCACTGGAAGAGATGGAAATAGTGCCGGTTGGGATCATTGCAGGGGGAACCGTTGGCTGTTCGATTCTGCTTCTCCTGTGCTTATTGGCTTTAGTGCTGTTTTTGTATCGACAGCGTAAAGGAAGTCGTCGCGGGGTCACGCTCGGCAAGCCAGATATCAAAGTCGAGACGATAAACAAAGAGAGCCACAGCCTGGAGGAAGATTCAGGCAGCGTCTCCACAGCCACGCGCATGGTGAAGGCCATGTACTCGCCTTTTAAAGATGACATTGACCTCAAACAGGAGTTACGCAGTGACACGCTGGACACGCGCCAGGACTACGAGCTcaagGACCCAACTAACGGCTACTACAACGTGCGAGCTTCCACCCATGACGAGGGACGTCCTGCTTCCCGATCCATGCACTACTCAGACTACCGCACCTCCAGTCAGCCAGGGGGTGCCGCAGCCGTGGTCAGCAGCAGCTCCGGGCCTCCTCCTGGGGCCACGGCGGGACCGGGAACACCAAGCAGCCTGGCTCCAGGTTCACGAGCGGGCTGCTACGACCCCCGGCCTCCCTCGAGACTCTCACACAACAGCTACGCCCAGTTCAACACGTTCACCCGCGCAGGACAGTCCCAGCAGCCTCCGCCTGGCTCCGGCCCACAGACTAGCGACTTCCCCGCTGAATGCAGCCTGTTGGACTCTTCCGGTCAGCTCGGCTATGAAAATTACGGCTATCCCTCACATTATCCCACGTTTCGGATGGGATTTGCTCCCCCCAGCCTCGCCCCATTAGAAGGAGGGCCAGCGTATGAGATGTACGGCGTGGGGCCGAGCGTTGGAGCCGGAGGAGGAGCCGGGACCCCAGAAACTGGACTTGGGAAATACGGCAGTTCCACACGGTTCTCCTACACTTCCCAGCATTCCGATTACTCCCACCGTCACACACAGAGGATGCAGACACACGTCTAAAAGAGAAACGGCATGTTTACGTAACATAAGTTGCGCTGTTATGCCCATATCGGCCATATaagtacacacactcatacagataCACGGGGTGAAGATGATGAACAAACAGAAGCTCAGACTGAAAAAATGGGCCGTGATTGGGGAATGGGATGCAGGGCAGGAGCGTCTAAGCATTTATTTCTCAGCTGCTTGAGCTGAAAGCGAAAGTCACAATCAAGGAAGACTGGGGTCTAGAACAGATCTAAGATCTTGATAGCATTCAGTGAATTCTGAAGGCTTTGAATGAGCTGGAGTATAAAGGTAATTCCTGAGAAATGAAGGGTCTCTGACAGAGATGGACGTATGAGATCCATGTTTGAATTCTCTTCAATGGCTTCTCCAGCTTCTCTCCTTACACCTAATGTAGTTTAAAATGACATGCATTGCACAATTCACAGCGGGGTCCAAAAGTCTGAAACCATCAAAAGTCTTTTCTATTTACCAAGTTTTTTATATTGACTGACTGTTCCCAgcgagcattttttgtttttaaaagatgtctaatagatgcctaatagatgtctaaacatagtcgtcttggctaaaaccaggctaaatttgggctgtcattGAAAATCGTCTCAGAAtaagccaaaactagactagtcatcaaatagacagaaatgaatgactacacatatgaagtctgtctaatctaaatgtgaatgttgatcttgtaaACTTTTGAAACTCAAATCATGATGAATACTTTGGATCATGGCTTCAGAGTTCCATATGATCGTTTTTGGTGTATTGCCATATTAAAATATGGTAGAATATTTTCTCATATTTGAATCCATAACAGCAGTGgacatgcaacaactttaatcattaggtaaacataaaacaacagtttccatctggagctccttcacgggacttgcCACTTGTAAGCACTCGCTCCATCGGGTTCGCGGCTCTtagcaccgcccacactcatcacagcaaccaaaccgaccaatcataGAGTTTGCGCTACACGTCAATACGACATGTAGTTCAACttttgagaggtgtgcatcaGCGTGAGCCACGGCGAGGGGTATCCGACCGCATTGAAGGCCATGTCCGAGCATACACGTGCGCTtcacgcagaaatataaatcagccttaaaactcttctttaatattctactAAAAAAAAAGGGCACCTACATCTTACTTGTCCTACAGGTGAGTAAATCAAAATGAGAATTTTAGATGAGCTATTTCTTTAAGGTCTGAAGTGGTTTTATAAACATCTCGAAAACACTATTACGGACTTTGATGTGTAGTTGGAGATCGGAGAGTCTTTCACTCActtattcacacagacacacacctgaTATTTGTGCCAAACACAGACGACTAACTTGAAGTATTTTACaccaattttgaaaaaaaaaaaaaaaaaactacctttcGGAGACCAGAAACGGTCTTTGGCTTTGAGACAAAAGCAAACAAACTGTCTTCAACGGGGTTTGAAGGATGGCGTTATCAAAGCAATGAGAAACCTGAGGATGAAGACAATCCCTCGGAACAGCGAGACACTCGTTTTGGTCTTCGTCCACATTTCCAACGAGCCCTGTAAATACTTTCCCATGTGTAATTCCGACTTCAAGTATTATTTTACAACATCCAATGTGATGCACTCTTTAAATGCAGTATTGTTCTGTTTTTCAATTGCGTGAAGAAAGTAAGCGATGGTACAGTACTTACGAAGAGTACGAGCTGGTACGATGCTATTAAAAGCGTTCGGGAAAACACCTTGATGACCTACTTGAGCTGCCAATCACTCATCCTTTATCTCGATGGCGGGGGACCATTTTGTTGGACAGTATTTGCATTCCCCTTTTGCCGTCTACGAACTTGAAGCTCCACAAAGTCAAGAAGAAGGAACATATGAAGGAGTGAACAAACTAAAGAGTGGCCTTAGGAAAACATGACTTTTATATTCCCTCACTTTATAAAGCGGCTTAAGGCCAGAGGAGTGTGTGTAGACAACGGTATGCTTGTGTTTTTGTGCGTGCGACTGAGCGTGAGTGTGAGGATATGAAAATCTTTATGTAATCCGTTCATTTACTTCTCTCACGTTCCTGCTCCAATACTTTTTCTTCTGCTGGTAGGAGTGTATCCTGTATAATTGTGTCTTAGAAGATAAACGTTGACCTTACTGTACTGTTTCTTGGTAGCTGAAAAAACAATGTTTGACAGATGTACAACAAAAAagttattgactttttttttatttctcattgatttttttccaatattttttaaaaatgttacgtaattattttttcacagtatatcaGAAATAAAAGCACTGTTTTTCT

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2126 Enables identical protein binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Is expressed in several structures, including forebrain neural keel; forebrain neural rod; pectoral fin bud; ventral mesenchyme; and ventral mesoderm. Human ortholog(s) of this gene implicated in nephrotic syndrome type 23. Orthologous to human KIRREL1 (kirre like nephrin family adhesion molecule 1).

Ensembl:

ensembl_id ENSDART00000009695

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067428 lncRNA downstream 40932 19028827 ~ 19029537 (-) True XLOC_034633
TCONS_00069174 lncRNA downstream 54582 19007755 ~ 19015887 (-) True XLOC_034632
TCONS_00067427 lncRNA downstream 66936 18990918 ~ 19003533 (-) True XLOC_034631
TCONS_00069173 lncRNA downstream 150484 18915542 ~ 18919985 (-) True XLOC_034630
TCONS_00069172 lncRNA downstream 259621 18780376 ~ 18810848 (-) False XLOC_034629
TCONS_00069175 lncRNA upstream 353054 19499980 ~ 19505267 (-) True XLOC_034641
TCONS_00067445 lncRNA upstream 459976 19606902 ~ 19612822 (-) True XLOC_034645
TCONS_00067452 lncRNA upstream 767982 19914908 ~ 19923228 (-) True XLOC_034649
TCONS_00069176 lncRNA upstream 898461 20045387 ~ 20050778 (-) False XLOC_034654
TCONS_00069177 lncRNA upstream 898461 20045387 ~ 20050795 (-) True XLOC_034654
TCONS_00067430 mRNA downstream 1930 19043750 ~ 19068539 (-) True XLOC_034635
TCONS_00067429 mRNA downstream 27068 19033883 ~ 19043401 (-) True XLOC_034634
TCONS_00067424 mRNA downstream 189111 18779555 ~ 18881358 (-) False XLOC_034629
TCONS_00067425 mRNA downstream 193360 18811167 ~ 18877109 (-) False XLOC_034629
TCONS_00067423 mRNA downstream 339995 18721547 ~ 18730474 (-) True XLOC_034627
TCONS_00067433 mRNA upstream 6394 19153320 ~ 19168375 (-) True XLOC_034637
TCONS_00067434 mRNA upstream 32893 19179819 ~ 19332293 (-) False XLOC_034638
TCONS_00067435 mRNA upstream 32893 19179819 ~ 19332421 (-) False XLOC_034638
TCONS_00067436 mRNA upstream 36525 19183451 ~ 19332421 (-) True XLOC_034638
TCONS_00067437 mRNA upstream 187388 19334314 ~ 19369002 (-) False XLOC_034639
TCONS_00067426 other downstream 242496 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 501136 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 822778 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 1207929 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067385 other downstream 1424719 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067455 other upstream 809152 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067492 other upstream 2676437 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 2683760 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 2689750 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 3790203 22937129 ~ 22937248 (-) True XLOC_034690

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_00982486_01019957.mRNA False 2450 mRNA 0.52 14 CI01000344 982228 ~ 1020034 (-)