RNA id: TCONS_00021204


Basic Information

Item Value
RNA id TCONS_00021204
length 4088
RNA type mRNA
GC content 0.52
exon number 24
gene id XLOC_010837
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32281200 ~ 32304780 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctCTCTTCCCAGTGGTCTGTTTGCACATTGTTGACATGGAGAGTGAGTTCTCACAGTCCCTCACTCCACCTGTGTCTCCATCTGCTCTGAATCATTATGGTGAATCTGCTCCCAGTCGGCCTCCTTGCTTCACCTGTGCTTATGAAGCAGGCAGAGAAGACACAGGACGGCTATCATCAAATGGCTACATCAGCAGAGGAGCCCTGAAGAGGTTGCTGTTAAAGCTCGATCCAGCTCCTGCAGATTTTGAGGGGGACACAgttgatatttttgacttcccATGGGTGACGGAGACGGCGCTGGTGGAATCTACCAAACTTCTGTTTGGCTTGTTCAGACAAAAGGTGTTAAAACTGGAAACGCTGGTGCAGTCCAGCTCACATGATTTTGGTCAAGCAAGCAGTCTTCATTATGAGGCAGAGGAACTGAGGCAGCAGTGTGTGCTTTTCCTCAGCTATATCAAGGTGTTCATTTACAGGTTTTTGGAGCCCTCACAATCCCTAGATGAAGGTCCTGTTCACCCCTTTAAAGACGCAGAGGCTCAGCTGCCCTCAGTCTTAGTGGAGGAGCTTTTCAGCATCACACTTCTTATTGGACGAATCGGAAATCTGCCAGCTAATGTCCAGAGTGCTTTCACTATTCAACACCAGGGAAAGCTCTTTCCTCCATCCTGGCAACTATTGCATCTGCACCTGGACATCCACTGGTCTGTTCTAGAGATCCTGCACCTGTTGGAGCAAAGAATGATGGGTCAGGTAGTTTACGCACACCAGTTTGTGAACTTAACAGGAGAGACGCTCACCAACATCAGTCTTTTTGAAGACCAGGTCAACAACCTGTTTTGTGATCTCATTGGCCTGGCCATGAACAAATATAATAAGGTGAGACCAACAGAGACTCTGAACACTCATCACTATCACTGCCTCTGCACAAAGGAATTATGGATTCTGCTCATACATTTACTGGAGCACAGGAGCAAAAGCATACACACACAGTCTTTTTGGAGCTATATAAATGCCTTGCTGCAGACTGTTCTGAAGGGGACGACTTCAGGAGATCGTGACCCAGGATTCCCTGTGCACTGTAAAGACCCCGAGGGCTTCACCTGGTGGCTGctcacacacctggcccagaTTGGGATGCACAACAGGAACGGCACTGCTCAACAGGAGAAACAACTGGAGGATAACTGGAGCTTTGTGATCGGGCTGCTGAAGTCTATCTGTGATCCAAAGAAAGCCGCACAAGAAGAGCAGATACGAGTGGTTGTCCATTGCTGCCTCAGTCTCAGCTTGATGTGGGGTCCAAACGTCAGCGCTGTCACAACATTCTGGGAATATTACAGCAAAAATCTAAACAGCTCTTTCACCGTGCCCTGGTTAGGTGTGTCGGGACTGGGCAGTATTTGCAAGACTCCCCTCTGTCTGTTGCAGCAGGCTAAAAGCTGCTGTAGCCCAGCACCGGTTGGCTCCAGCTCGCACACTCAGCTCTACCGCACAGCCAACTCCTTCCATATCTTTCTACGGATTCTGGCCCTTCACCTGAGCCAGGAACATGCTGGCGGCGCCCCCTGGAGACAGATCAAGGGCAGACTCTACTCAAAGTTCCACCAGAGGCGGATGACGGAGCTCTCTGACACGGGCCTGCTGCACTTCCTGCTGCTTTTCCTGGTCCTGGCGCAGTGTGCAGAGCTGGAGGACGTGGCCAGCCGAGCTTGCGACTTACTGGCCATGCTGCCCACCAACTCCACGCCCCTGGCCCTGCGTGCGCTGCAGTGGAGGGGCCAGCTGGCTCTTGTGCTGCTGTATTTGGAGAAGGGACTGGATGTTGGCGCGTTGGCGGAGCAGTTGGCCGTCTACTTCAGCCAAGCGGCCCGCGAGTTCTACCTGAAGACCACCGAGCCTTCACGCAAGCTAGCTCTCTGGGCACCACTTAGCTCATACCTGGAAGGGGTGAGCGAGGTGTTCGAGACGAGTCCTAATCTTACCCTGTCAGAGGAGAGGCTTCTGAACGAGGGCTTTGGACTCCTGCTGCCCGCCTGCCGCCAGTCCGAGCTCAGCTCCGCTTTGGGCTTCCTGCAGACGGTGCTGGCACAATTACGGAGAGTTCACCAGCGCTGTGGCCAGCCGTCTCACTCTGTAGACTCTCCCAGCTGGGCTCCTCTCCCCAGCGTGGCTAAAGAGCGCCACCAAGCGGTAGCAGCGGCACTCTGGTCCCACTTCTTCCCCTTCCTGTGCAGCATGAGGCTTTCCCAGACCCCCCCGCCACAGCTCGCGGACGCCGCAGCAGGCTTCACGCTGTTGGCATTAGACATGCCTGGCTCTGCCCCTCAAAACCTACAGCCCCACCCCATCCAGTCCATTATGCAGAGCTTTGGCTGGGATGAGATGCTCCACCCCCTGCTGGTAACCCACTATCTCAATCACCTGCTGCAAAATGGAGAACTGGTCAGTTGGGTTAGTTCTGGACAAGGCTCAGGTTCAGCCCAAGctttgtgtgtgcgtgcctgGATCCGCTGTGTCCTACAACAGTACCTCCATAAAAGCCCAGATGCTCCAGATACAAGAGCAGGCAGAAATCTGGATGAACAGTTGGCCGAGTTAACCAGACAGGTCTTCCGGCTTCCAGAAGTGGAGTTTGTGCTGCAGAGAGCTGGCCTGCAGTCTGCTGCTGTCAAGGACCCCAAAGCTGCGATGGCAGTGTTCCTCAAGGCTGTGGGCCGATCCTACTGTGAGCTCCAGCTTCTTTCTGAGCGTTCTTCAGCAGTGTCTCGAGCATTGGAGTATGTAGGAGATATCCTTAAATACATCAAGCCTTACCTGCAGAACAAGAGCCGGGAGGGCCTACACCTAGCGTACTGGACCATAGGCTGTTTGGTCAAGCACTGGAGCCACCTATTGGCCACCTCTAAAGCCCAGCAGCTGCTCTTCCGCATTGTAGATGTGCTTTTACTGCCCCACGCTCTCCTCCAACAGGACACTGCTGCACACACTCAAATGCTGTCAGCCCTCAAAGACAGTCTGCCTATGTTCCTGCAGGGTTTGTCCGTGGCAGTGAGCGTGTCCCATTCTCAGGGGGCGTACctgaagcagcagcagcacagTGTCATTTCACAGTACCTTAGCCGCTTCCTCCCAGCCACACCCTCTACTGGAGCAGTGGTCAATCATCCTGTCCTGCTGGCGGCCTGTGAATCTACACCCAGTCCACAGGGTGAAAGACTCAGGAAGAGCATTCTGCATGTGCTGAGAGAGAACTTCCTCCAGTTTAAAGGTCTCGCTCCTCCTCCTCGACTTGCAGCTGTTCTCTGTTTTCTGTTGGAGCTCCTGAAAAGGAACAGTGACAGAGATCCTGCCCTGCTCACGATACCCCTTCCTTCAGTGCTGCGCTGTTTAATGCTGGTGAATGAACCACAAGTAAAAAGGCTGAGCTCAGAGGTTACACAGCTCATTGTGGAGAGGTGCACGGCTGCGGTCGGAGAACAGCCATGTGAACACACTACTGCAATCCTACGGGCCTTTGTGGATGAGAATGAAGGCGTATACGATCAGCAAGTGTATAATGTTCTAGAAGTTGTAGCCGTCCTTCACCCCTTCACAGTGGCGGCTCTTATTCCCTTTCTGACACTGAGCCTGAGAAAGACAGAGTGCAAGAGAGGTCTGGGAAAGAATACCTCACTCAGGAATGGCTATAGGAGGTTGCTGGCCTTGCTTGGAGACAGTGGGCAGGCTGAGATGATTAGTTTAGAAGAAGACTGACTTCAGTGCCTGCATCAACTCTCAATCCACTGATGTATACCATGTACACGATGTAGACTTGATTGTGTTGCGGAATTGTGAATAAACTTTGTTTGAATACCCTTGTGTTCTGTGCCTCGCTATCAGACATCTGTCTTGGTAACACATGGCTTTAGTTAGGATGCTGGTCAGTCGCTGCTAGGGCTGGGTAATGAAATGCATCAAATCATGTGTTCACGTATGTTGTTCTGACAGAGAGACAAAATCTCTttcttaaaatacaaaaatgcagGGTTTGAGACTATTCATTGCTTAAGGAAATGAGCAATATTTGTAGGGACTTTAATAAAG

Function

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0042555 MCM complex cellular_component
GO:0035101 FACT complex cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3869 Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Orthologous to human MMS22L (MMS22 like, DNA repair protein).

Ensembl:

ensembl_id ENSDART00000191408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022181 lncRNA downstream 231207 32043389 ~ 32049993 (-) True XLOC_010829
TCONS_00021193 lncRNA downstream 242137 32028079 ~ 32039063 (-) True XLOC_010828
TCONS_00021190 lncRNA downstream 267701 32009238 ~ 32013499 (-) False XLOC_010827
TCONS_00021192 lncRNA downstream 267772 32010608 ~ 32013428 (-) True XLOC_010827
TCONS_00021811 lncRNA downstream 389168 31882148 ~ 31892032 (-) True XLOC_010821
TCONS_00022182 lncRNA upstream 44938 32348773 ~ 32363571 (-) False XLOC_010838
TCONS_00022183 lncRNA upstream 44938 32348773 ~ 32378676 (-) True XLOC_010838
TCONS_00021813 lncRNA upstream 83741 32387576 ~ 32389474 (-) False XLOC_010839
TCONS_00021812 lncRNA upstream 83741 32387576 ~ 32389474 (-) False XLOC_010839
TCONS_00022184 lncRNA upstream 84422 32388257 ~ 32389294 (-) True XLOC_010839
TCONS_00021203 mRNA downstream 47737 32226664 ~ 32233463 (-) True XLOC_010836
TCONS_00021202 mRNA downstream 59888 32216552 ~ 32221312 (-) True XLOC_010835
TCONS_00021201 mRNA downstream 72472 32205660 ~ 32208728 (-) True XLOC_010834
TCONS_00021199 mRNA downstream 76730 32197554 ~ 32204470 (-) False XLOC_010833
TCONS_00021198 mRNA downstream 96740 32167430 ~ 32184460 (-) True XLOC_010832
TCONS_00021208 mRNA upstream 262383 32566218 ~ 32582798 (-) True XLOC_010841
TCONS_00021211 mRNA upstream 326239 32630074 ~ 32649929 (-) True XLOC_010844
TCONS_00021212 mRNA upstream 348515 32652350 ~ 32662947 (-) False XLOC_010845
TCONS_00021214 mRNA upstream 358634 32662469 ~ 32673028 (-) False XLOC_010845
TCONS_00021215 mRNA upstream 360515 32664350 ~ 32672883 (-) False XLOC_010845
TCONS_00021200 other downstream 76771 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 117405 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 161597 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021178 other downstream 366500 31905856 ~ 31914700 (-) True XLOC_010822
TCONS_00021163 other downstream 630017 31646390 ~ 31651183 (-) True XLOC_010811
TCONS_00021209 other upstream 270275 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021210 other upstream 326239 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021237 other upstream 800048 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 1211931 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 1446232 33750067 ~ 33758285 (-) True XLOC_010856

Expression Profile

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