RNA id: TCONS_00022183


Basic Information

Item Value
RNA id TCONS_00022183
length 1439
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_010838
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32348773 ~ 32378676 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAGAagaggaaaaagaagaagaagaaaaaaaacaaccaagCAATGAGAGTCAAGAGCGAAGTGGAGGCGCCGCCAGGCTGATTCAGGCACGTTCTCGTCTGCTCGCCGCAGAGCTACtgaTTGATGTGATGTGTGATGAAACAACGCCTCATCCCTCGACCCTTCAATCACATGTGGTCACAGAAGATGCATTTGAGATGCATGTTATTACCAGGTGAAAACCGTGCGGCCCTTCATCTGGACAGACCGTTGATCCATATCACCCCTTCTGTCCTCACCGGCCCACTGTCACCCGCCGGAGAGGGAGAAACCCAGAGACTCAAAGCAGGACGGGAGGGTCGAAAGTGAGGAACGCGAGGAGAGAGAGCGGCAAAGGTCGAAGGCACTCTCGCCCcttaaatgaatgaaggaaaaaaaGGGAAAGAATGAAATGGAGAGGGGATCCAGCGGTTGTGTTGCGCTGCTCGCTCTATTGTGCTTGCTTTCAGAAGTGCTCAGTTTGAGTGGCAGGCCGTCACAGATCAGCTCCCCGCTAAAGCATCCTGGCAGGCCGGGGTGACGGGCCAGGAAGGGATCTAAGTGGGTTTATCAGCGCCTCTTAACGCCTCTCCAGCTCCCTGACACAAAAGAGAGGGGTATTAAACATCTAAAGCAAACCAAAAAGCGTGAAAGCTCCTTATAGGGCCTCAGGATTGCGGATGTGCCTgggatcttaaaaaaaaaaagggcagagaaagaaaagagaaaagaggaggagaaaagagtttcacaaaaaataaaaacaatgaaaaatgtcaaaacaatACAGAATTCAAAAAGGAGAATAATGTTGTCATTCTGGACAATCACATACTAAtgcaatagaaaaataaaaatggctacacagcaagaatgttttatttatttatacattttctttttagctttcagtacctttaataatcaggggtcaccacagcggaatgaaccgccatgttttacttaaataaaaataataaaaattgtgactgattttaaaaatggcatttttctCTGCTTTGTCGTAAttatgtgtttaaatgtgtgattatacagtatatacacaacaTGGTTGCCGggtgtgattttgccaagtacaatgCGATACCggattaacatctgtgttgaccctggaacatcattttttgtTGGAATATGTAATCCATACCCATTCCCTAGccctaaacacaaccataacagtaaattatttccaaaatcagaggagaataacagttggataacaatcatgtagaagtggaTAAACCTAACAGTAAGCATAAACATAACATAACGGTAACAAAACAGTAAagatatcccttaattctgattggttgatgggAATATTGTTCCAGTATTAAcctagatgttaatccaggaatgAGTCCTACTTGGTTAAATCACACTAACCCAACatggct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021206 lncRNA downstream 59037 32287796 ~ 32289736 (-) False XLOC_010837
TCONS_00022181 lncRNA downstream 298780 32043389 ~ 32049993 (-) True XLOC_010829
TCONS_00021193 lncRNA downstream 309710 32028079 ~ 32039063 (-) True XLOC_010828
TCONS_00021190 lncRNA downstream 335274 32009238 ~ 32013499 (-) False XLOC_010827
TCONS_00021813 lncRNA upstream 8900 32387576 ~ 32389474 (-) False XLOC_010839
TCONS_00021812 lncRNA upstream 8900 32387576 ~ 32389474 (-) False XLOC_010839
TCONS_00022184 lncRNA upstream 9581 32388257 ~ 32389294 (-) True XLOC_010839
TCONS_00022185 lncRNA upstream 179379 32558055 ~ 32559783 (-) True XLOC_010840
TCONS_00021814 lncRNA upstream 208762 32587438 ~ 32597276 (-) False XLOC_010843
TCONS_00021205 mRNA downstream 43993 32281432 ~ 32304780 (-) False XLOC_010837
TCONS_00021207 mRNA downstream 44009 32303643 ~ 32304764 (-) True XLOC_010837
TCONS_00021204 mRNA downstream 44938 32281200 ~ 32303835 (-) False XLOC_010837
TCONS_00021203 mRNA downstream 115310 32226664 ~ 32233463 (-) True XLOC_010836
TCONS_00021202 mRNA downstream 127461 32216552 ~ 32221312 (-) True XLOC_010835
TCONS_00021208 mRNA upstream 187542 32566218 ~ 32582798 (-) True XLOC_010841
TCONS_00021211 mRNA upstream 251398 32630074 ~ 32649929 (-) True XLOC_010844
TCONS_00021212 mRNA upstream 273674 32652350 ~ 32662947 (-) False XLOC_010845
TCONS_00021214 mRNA upstream 283793 32662469 ~ 32673028 (-) False XLOC_010845
TCONS_00021215 mRNA upstream 285674 32664350 ~ 32672883 (-) False XLOC_010845
TCONS_00021200 other downstream 144344 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 184978 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 229170 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021178 other downstream 434073 31905856 ~ 31914700 (-) True XLOC_010822
TCONS_00021163 other downstream 697590 31646390 ~ 31651183 (-) True XLOC_010811
TCONS_00021209 other upstream 195434 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021210 other upstream 251398 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021237 other upstream 725207 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 1137090 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 1371391 33750067 ~ 33758285 (-) True XLOC_010856

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU163456 True 353 lncRNA 0.52 1 CI01000027 9555699 ~ 9556051 (-)
tiger barb (Puntius tetrazona) TU163456 True 3989 lncRNA 0.43 4 NC_056714.1 8623571 ~ 8629819 (+)
mexican tetra (Astyanax mexicanus) TU163456 True 860 lncRNA 0.42 6 NC_035910.1 11573750 ~ 11576853 (+)