RNA id: TCONS_00022185


Basic Information

Item Value
RNA id TCONS_00022185
length 1530
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_010840
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32558055 ~ 32559783 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGGCTCTTTGCCAAGTGGACGCAGAGGCGCGCACCTGAGCTCCGCCTCTCGACCACGCTTATTGGCTGAGAAAGGATGATGGACGCGCTTTTTTGAGGCAGCTTTCAGCTGATTGGACGCTCGAGAGTCTTAACAAACACTGCCTTCTTCCCTCAAAAGAACTCCGTGTCCTGCAGCACCTCTGAAATGTGAGGGACCGACGGGCCAACAAGACCAGGGCGAAGAACATCAAAGgttCTGGGATTTATTCGTAAAATAAAGGGAAACTTTTGTAGTCTTTCTAGCGTAATGTTTGCTGGTCAAGCTAAGAAAATTATACTTATACATTGTTAATTTAACAGAGAAtcttctgagttttttttttgctaaaatttaACTATAAAGTGAAAAGGTGTTGACAAACTTATGGAAAAATGGGCGCTTGACTCATTAAAGTGTTAGATTTTGAAGAGCTGACATAAACAAAagcttaaattaataaaagttttgGTCACAAAATAACATTGATGATCAGaaataaattatcattttagCAGATtagtaaagaataaaaatgtgGTAACTAACTTcacaaagtaaataataaaaataataacctcCGAAAGAAGAGGAAAATAAAGGCAGatgattcatttgtttaattcacTATAAATGTAATCATAAAGCATAAAGAACTCAGAGAATGACAAACGAAACATATTGctaaataattttgtattttactttaaaaaataaagagcaGCATAAAGTGTACAATTATTGGATGCCATAAACAATTAACAACTAGTATAAGAGAGGGAAGTAAaggattaaacatttaaaagactTGTTCACTGAACACATgggttaaaataaaatacttcaaaCTAAAATGATATATAAGATTTATAAAaacttttataattaaataaagacaTAAATGTGGCACAATATGTAAATTATTTAGATATATAGACCACATTTTATTGAttagataaaacaaaaaattcagATTATCTAAACAGAAGTTACATGATTTACAATCAGAAGCACTTGTGCTGCAAACTTAGTGACTTTCTAAACTGACTAGtaagtatttaagtatttttactttttttgttatctATGTTAATTACAATTAAACAGGCTAAACCATTATTAGGCAAttccaaacattttaaataagcagttacGCTTCTCTTTTAACCACAACTGTCTCTATAAATcctaatagaaaataaaaaaaactttttcttttgGGGTCTGCATGGTGTACTCACGTCAAAAGAATATTTCAAAGAGGAACAGTGGGCCGTTTGGGACCGCAGGTGTCTAAAGCTGACCAGCTGGCTTCTCTGTGAGCCTCTGTAAAGAAAAGCACACGACATTGTCCGAGGAGGGGGACATTTTTTCAGCGGCGCTGCTGGTTGCTATAGAGAGCAGTAAATTAAACAACGCCTCATACGTCACCAGCATCGCCTCCTCTGGACGGCCCTACGTAAATCAGCAAGGGTAATGGACAAAAGACAAAAAGGAGCAAGGAAGACAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0007423 sensory organ development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko00521 Streptomycin biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021813 lncRNA downstream 168581 32387576 ~ 32389474 (-) False XLOC_010839
TCONS_00021812 lncRNA downstream 168581 32387576 ~ 32389474 (-) False XLOC_010839
TCONS_00022184 lncRNA downstream 168761 32388257 ~ 32389294 (-) True XLOC_010839
TCONS_00022183 lncRNA downstream 179379 32348773 ~ 32378676 (-) True XLOC_010838
TCONS_00022182 lncRNA downstream 194484 32348773 ~ 32363571 (-) False XLOC_010838
TCONS_00021814 lncRNA upstream 27655 32587438 ~ 32597276 (-) False XLOC_010843
TCONS_00022186 lncRNA upstream 27950 32587733 ~ 32627440 (-) True XLOC_010843
TCONS_00021213 lncRNA upstream 96320 32656103 ~ 32662731 (-) False XLOC_010845
TCONS_00021219 lncRNA upstream 105800 32665583 ~ 32668496 (-) False XLOC_010845
TCONS_00021220 lncRNA upstream 108067 32667850 ~ 32669573 (-) False XLOC_010845
TCONS_00021205 mRNA downstream 253275 32281432 ~ 32304780 (-) False XLOC_010837
TCONS_00021207 mRNA downstream 253291 32303643 ~ 32304764 (-) True XLOC_010837
TCONS_00021204 mRNA downstream 254220 32281200 ~ 32303835 (-) False XLOC_010837
TCONS_00021203 mRNA downstream 324592 32226664 ~ 32233463 (-) True XLOC_010836
TCONS_00021202 mRNA downstream 336743 32216552 ~ 32221312 (-) True XLOC_010835
TCONS_00021208 mRNA upstream 6435 32566218 ~ 32582798 (-) True XLOC_010841
TCONS_00021211 mRNA upstream 70291 32630074 ~ 32649929 (-) True XLOC_010844
TCONS_00021212 mRNA upstream 92567 32652350 ~ 32662947 (-) False XLOC_010845
TCONS_00021214 mRNA upstream 102686 32662469 ~ 32673028 (-) False XLOC_010845
TCONS_00021215 mRNA upstream 104567 32664350 ~ 32672883 (-) False XLOC_010845
TCONS_00021200 other downstream 353626 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021197 other downstream 394260 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021196 other downstream 438452 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021178 other downstream 643355 31905856 ~ 31914700 (-) True XLOC_010822
TCONS_00021163 other downstream 906872 31646390 ~ 31651183 (-) True XLOC_010811
TCONS_00021209 other upstream 14327 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021210 other upstream 70291 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021237 other upstream 544100 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021239 other upstream 955983 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021244 other upstream 1190284 33750067 ~ 33758285 (-) True XLOC_010856

Expression Profile

//