RNA id: CI01180000_00361420_00364335.mRNA


Basic Information

Item Value
RNA id CI01180000_00361420_00364335.mRNA
length 1580
RNA type mRNA
GC content 0.35
exon number 4
gene id CI01180000_00361420_00364335
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 361420 ~ 365126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGCTTGCTTTTTTCCTCATTGTGACTTTTCATGAAATCATCCTTGGTGCAGAAGAACATGCATACCAGCAGTTCATTGAGTGTGCATTCAACAGTCAAGGGCAAGTAGACCATACATGGAACTATGGGTATGATGGAAAAGACATCATGCATGTGGATTTGGTGAAGAAAACTGTGATTGCTACCAGTGAACCTGGTAAAATGTTAGAAGAAGAAAGAAAACATATAGAGTACATTAAGAGGAAAGAAGAAAAACTAAAGATGGTGTGCTCCGCTGTGAAAACTGTCTTCCTAAAGTCCAACAATACTCTATCAAGGGCAGCAAAACCAGCAGTGCTTTTATCTGCTGGAGGAGAACAGGATCAGGAATATCTTAAATGTGTTGTGCATGGCTTCTATCCGAATGTCATCCGAGTGCGTTGGACCCAAAAAGGAAGGCCGGTCTATTTTGGTGTATCAAGTACTGGAATACTCCCTCACAGAGATGGCACATTTCAGATGACCTCCTATCTTAGCCTTAATAACATGAACGCTGACGGGGTTACCTGTGAGATTGAACACCTAAGCCTTGATGGGATACTGAGGAAAACCTATGAGGAGAAATCACAAATCACAGAACATGTACTTTGGGCAACGGTTGCCTTTTTCCTCGGATTTGCATTGCCGGTGTTCCTAACTGTAATATTTATACTGATAAGGAAACAAACAACAGAACCACCTGAGGACACAAGTGACGGATCAAAAGCATCTTTATCTTTGAATTTAATGAATATGTCTCAGGAAACATAAAATATGTGACCCTGGACCACAAAACCAGACATAAGTCGCACGGGTATATTTGTAGCAATAGCGAATAATACTTTGTATGCTACAAAATGATCGATTTTTCTTTTATGTCAAAAATCATTAGGATATAAAGTAAAGATCATGTTCCATGAAGATATTTTGTAAATTTCCTACCATAAATATATCAAAAAAAAATTTTTTTGTGAGTGGATATGCATTGCTAAAGACTTCATTTGGACAACTTTAAAGGCGATTTTCTGAATATTTAGATTTTTTCACACCCTCAGATTCCAGATTTTCAAATACAAACAATATATCAATGGAAAGCTTATTTATTCAGCTTTCAGATGATGTATAAATCTTAATAAAAAAAGACCCTTATGACTGGTTTTGTGGTCCAGGGTCACATATGTAAGGCGACTGTGACTCCAAACCAATTATTATTATAATTTTGACCACAGACAAATACTATTTTCATATGTGTATAATTCTATAGAACTGAATCACAAGCATAGTATACACATAATTTCTGTATCTCTATAGGCAGAGAGATTTTAAACACTTGTTGATCACTGCTTAACAAACTATATTATAGCTATAACTTCTTGTTAATTTTGCATAGTCTAACATACATACTTCACAATGTTGTAATTATGGAATTAGCCTCACTTGCAGTCATATATTTACACACAATAAACATATAATATAATATATTGTAAAAATATATTATTCATTAAATCTTTTTAGCCTCTGTCTTGTTTAATTTTTGCTGATTTTCACCTCACACAGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799153 lncRNA upstream 34442 322749 ~ 326978 (+) True G678508
TU799087 lncRNA upstream 60092 299171 ~ 301328 (+) True G678448
TU799146 lncRNA upstream 110507 250685 ~ 250913 (+) True G678501
TU799144 lncRNA upstream 117709 243506 ~ 243711 (+) True G678499
TU799138 lncRNA upstream 126218 233616 ~ 235202 (+) True G678493
TU799075 lncRNA downstream 22715 387841 ~ 390386 (+) False G678444
TU799078 lncRNA downstream 22715 387841 ~ 390386 (+) True G678444
TU799205 lncRNA downstream 69607 434733 ~ 487143 (+) True G678554
TU799073 lncRNA downstream 80613 445739 ~ 492631 (+) True G678442
TU799246 lncRNA downstream 138745 503871 ~ 551174 (+) True G678595
CI01180000_00306160_00314770.mRNA mRNA upstream 45676 306160 ~ 315744 (+) True CI01180000_00306160_00314770
CI01180000_00263000_00297934.mRNA mRNA upstream 62954 263000 ~ 298466 (+) True CI01180000_00263000_00297934
CI01180000_00250154_00256723.mRNA mRNA upstream 102752 250154 ~ 258668 (+) True CI01180000_00250154_00256723
CI01180000_00105493_00124081.mRNA mRNA upstream 237337 105382 ~ 124083 (+) False CI01180000_00105493_00124081
CI01180000_00009241_00055691.mRNA mRNA upstream 305470 9241 ~ 55950 (+) True CI01180000_00009241_00055691
CI01180000_00368639_00375465.mRNA mRNA downstream 3513 368639 ~ 376247 (+) True CI01180000_00368639_00375465
CI01180000_00427700_00437883.mRNA mRNA downstream 62524 427650 ~ 438466 (+) True CI01180000_00427700_00437883
CI01180000_00661446_00671602.mRNA mRNA downstream 295983 661109 ~ 672188 (+) True CI01180000_00661446_00671602
CI01180000_00737754_00743866.mRNA mRNA downstream 370184 735310 ~ 744211 (+) True CI01180000_00737754_00743866
CI01180000_00765917_00776252.mRNA mRNA downstream 400671 765797 ~ 776911 (+) True CI01180000_00765917_00776252
TU799069 other upstream 209768 147934 ~ 151652 (+) True G678440
TU799410 other downstream 694717 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 784425 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 1153227 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1430044 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 2023741 2388867 ~ 2397360 (+) True G679324

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012259 True 956 mRNA 0.42 4 NC_007124.7 47810211 ~ 47816048 (+)