RNA id: CI01180000_03610257_03623051.mRNA


Basic Information

Item Value
RNA id CI01180000_03610257_03623051.mRNA
length 3398
RNA type mRNA
GC content 0.41
exon number 9
gene id CI01180000_03610257_03623051
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3609420 ~ 3624142 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTTAAAAAAAAAAAAAAAGATAAAAATCCAACCACAAAAACGCCAATATTTTGCTTGTGAAGGGAGGTCGCGTTTGTCTGAGGTAAGTAACCATAGCAACCATAGCAAGCACAACAGTAGCTATTGCCATCATTTGAACACATGATCATACATTATTAAATGATTAAAAATAGTAGCCAACAAACTGGTTTGTTTGCCGTCTTTAAGGTTAGTTAACTGTGTTAGGGGAGGCAAAAGATTCTACAGGAAATTGAGAGGAAATTACTGACAGAAATTCCTTTAAAAAGCTCACTGAACAATTCTCTCTCTCACACACACACACACACACACAAACAATCAAAAATTACACTATAATAGGCTAAGTTTACCCCCTTTATACACAGGGTTAAGTATGGTCACAATCATCTTGGTGCAGCGCCTCTGAAAATGTCGCATTTGTCACTTTATTAATCCCCAACAACAGCAAAACTAAGTAAAGGTCTCATAAATCACCGCTTGATGTGAATTCTCTTAGGTAGAGCAGTCAGCTCTTTTCCTACAGGCAGTTTCTAATAATTCCCGGAACACTGAGAGCGTCGGTCTCACTCAGCAGAACGCTGGATGAACACAGCAAAGCGGCGGTGCCGCAATCAGCGAAACCCCGCATTCACCATTCTCATCCACACCGCGTCTGCTGCCTGACAGAAACTATAGGCTCAAGCTATATGCGTTTGTCTAGACAACAACTGACAACATACGTTGACGCTTTCACTTATCGTTTAACGAATCGCTCGAAAAAGGTTTGATCATCTTTAAGCTCCAAATCATCGTTTGGTTATAAACCGAGCGTTCGCACAATGGTTCTGCTGCATCGCCGCCGGAGAAAAGAAGCACTGGTTTGGCTGTTGCCCGGTCTGCTTGGAGTCTGCATGGCATTTGGCCCAAGCAAAGCAGAGGAGGAAGATTATGAGGATGTCCCCATAAATAAAACATGGGTTTTATCACCAAAGGTCTACGAGAGCGACGTCACCCTTATCCTAAACAAATTACTGCAAGGTTATGACAACAAACTGAGACCAGATATCGGAGGCAAGTCACTTTTTGGTTATCCAGGCCCACACAGAAGGATTTTGCTGATGTTTTTCTCTTCGCCAGAGCTGTACAAGTCACTTTATTCTCAGTACATCAGTGTTCTGGAAGCGACGCAGCTGACTAGAGTTCAGTTATTTAAGAGGATTTATCTCAGTGGTGTTCAGGAGTACACCATCGACATCTTCTTTGCTCAGACGTGGTACGACAGCAGACTGAAATTCAACAGCTCAATGAAACTCCTCATGCTCAACAGCAACATGGTGGGAAAAATCTGGATCCCTGACACGTTTTTCCGTAACTCTCGTAAATCTGATGCCCACTGGATCACGACACCGAATCGCCTTCTGCGGCTCTGGAGCAATGGAAGAGTGATGTATACTCTAAGGTTGACTATTAATGCGGAATGCTACCTTAAGCTGCATAACTTTCCCATGGATGAACATTCGTGCCCTCTGGAGTTTTCAAGCGATGGGTATCCAAAGAATGAGATCCAGTATAGATGGCAGCGTCGTTCGGTTGAAGTTGCAGACCAGCGGTACTGGAGGCTTTACCAATTTGCCTTTGTGGGCCTACGAAACACTTCTGATGTGGCAAACACTCAGTCTGGAGAATATGTGGTTATGACTATTTTCTTTGACCTGAGCCGGAGAATGGGCTACTTCACCATCCAGACCTACATCCCCTGCAGTATGATTGTGGTTTTGTCCTGGGTCTCTTTCTGGATTAACAAGGATGCTGTACCTGCCAGAACATCTTTAGGAATCACAACTGTGCTCACCATGACAACCCTAAGCACCATATCGAGGAAGTCCTTGCCGAAGGTGTCGTACGTGACAGCCATGGATCTATTCGTGTCTGTCTGCTTCATCTTCACCTTTGCTGCTCTTATGGAATATGGGACTCTACATTATTTCACAAGCAATCGACAGAACAAGAAGACCAAATCAAGCCATGCACAGAAACCCAGCATGGTTAACATCAGACCAGGGACATCTCTGCTGCAGATGAACAATATTGCTCCCTACCATGAGGATGATGATTATGCGTATGAATGTCTGGACGGGAAAGACTGTGCCAGTTTCTTCTGCTGCTTTGATGATTGTCGCTCCGGAGCTTGGCGTGAGAACAGAATGCATGTCCACGTCTCCAAAATCGACTCCTACTCCCGAATATTCTTCCCAACCGCCTTTGGCCTCTTCAATCTTGTCTACTGGATTGGATATCTGTATCTTTAAAGATGCTTGGCAAGTGGGAGAGGGACTCAGTTCTAGTAATATTCGCAAATCATCTGTAAATTCTCCATCTGCTAAATCTGGCAGCATAAATCTTTGAGAGAAGGGGACGTGTGAGGCTTGAGTTGGATGTATTAATACTTAATGTGTCTTTAATTGTACATGAGATGTGATTTATTGCAGGATTTGAATCTTAGAAGGACAATGTATTGATGCCAAGAGAAGGAAGGAAATGCTAACAGTTCGATTGTTCATCAACTACACACGCCATATCAAACAGATCTCATCTACGTTGCCTAGTTTAAAATGATCTCTTAAATATCCACCAAAATATCTGCAGAATTTTTTTTGAACTGCAATATTAGCATCACTAATGCAACTATGTTAACTTCAGGTTATTATCTCTCTGGCTGAAGCATAATATGATTATTTGCAATGAAAAGTAGATATGATATTAGTCGTTTCGGATACTAATTTATAGCTAGCTACATGTCAGAAAACTAATATTTACATATGATAATCTCTGTTTTTATTTCAAACTTAAAGTAGCTACATTTCTGTGTGAATTACCTGCATTCAGTTGAGTACTAAACAAACCAAAGCATAGATATCTGAAGGTTACATGAATAGAATTTTGTTTTCTGCTCAAGAATTACCCAGAAGCCATTTACCTGGAATTAGCCTATAATTATACTGTGAAATGTTCTTGACTTGAACTAATAAGCTGTCTCTGCAATAGATGAAACAAAGAAATGCCAATGTGCCCAAGATAAAAGGGTTCATGTGTTTTTTTATATATCGAACAAAAGGAACAGAGCAGCCTTTACAATGCACAAATGTTCAGTGTCCTTTAGTACAAATTAGAATTCATCACTCTCTTGCGCATTCAAGACATCTCCTTGCGAATGGCTAGATTTCTGTGAGCGTAATTGCATGACTCATCTGAGCTCCTACGGCTAATCAACCCATATTTGGAAACCAGTCTGATGGACTTTCTTCAGCAGAAGAGCTCTAGACAGACGAGTATCAAATCTAAAGCATTTGAAAACATACAGTCTTCATAACACAAACCATGGATGCCTTCTCTGTTGGT

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05186 GABRG; gamma-aminobutyric acid receptor subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801733 lncRNA upstream 4315 3604748 ~ 3605105 (+) True G680816
TU801732 lncRNA upstream 4802 3604047 ~ 3604618 (+) True G680815
TU801632 lncRNA upstream 36285 3553277 ~ 3563250 (+) True G680723
TU801722 lncRNA upstream 59137 3550021 ~ 3550283 (+) True G680805
TU801660 lncRNA upstream 84994 3517625 ~ 3524426 (+) True G680743
TU801740 lncRNA downstream 15925 3640067 ~ 3640356 (+) True G680823
TU801741 lncRNA downstream 17318 3641460 ~ 3641755 (+) True G680824
TU801742 lncRNA downstream 17745 3641887 ~ 3642106 (+) True G680825
TU801748 lncRNA downstream 28596 3652738 ~ 3653016 (+) True G680831
TU801626 lncRNA downstream 50150 3674292 ~ 3825843 (+) False G680721
CI01180000_03590508_03607430.mRNA mRNA upstream 1645 3590508 ~ 3607775 (+) True CI01180000_03590508_03607430
CI01180000_03571292_03571611.mRNA mRNA upstream 36993 3569165 ~ 3572427 (+) False CI01180000_03571292_03571611
CI01180000_03447461_03475999.mRNA mRNA upstream 133318 3447344 ~ 3476102 (+) True CI01180000_03447461_03475999
CI01180000_03425920_03442839.mRNA mRNA upstream 165237 3425514 ~ 3444183 (+) True CI01180000_03425920_03442839
CI01180000_03286578_03289266.mRNA mRNA upstream 320117 3286063 ~ 3289303 (+) True CI01180000_03286578_03289266
CI01180000_03663974_03689344.mRNA mRNA downstream 39294 3663436 ~ 3689472 (+) True CI01180000_03663974_03689344
CI01180000_03701881_03732121.mRNA mRNA downstream 77327 3701469 ~ 3732123 (+) True CI01180000_03701881_03732121
CI01180000_03741295_03752345.mRNA mRNA downstream 116354 3740496 ~ 3752640 (+) True CI01180000_03741295_03752345
CI01180000_03757478_03765413.mRNA mRNA downstream 131548 3755690 ~ 3765666 (+) True CI01180000_03757478_03765413
CI01180000_03798341_03812950.mRNA mRNA downstream 173632 3797774 ~ 3813051 (+) True CI01180000_03798341_03812950
TU801631 other upstream 37023 3553277 ~ 3563250 (+) False G680723
TU801630 other upstream 37023 3553562 ~ 3563250 (+) True G680723
TU801022 other upstream 913984 2694407 ~ 2695436 (+) True G680192
TU801024 other upstream 915186 2693355 ~ 2694234 (+) True G680192
TU800043 other upstream 1212060 2388867 ~ 2397360 (+) True G679324
TU801653 other downstream 141549 3765691 ~ 3784441 (+) True G680736
TU802064 other downstream 1159163 4783305 ~ 4785631 (+) True G681137
TU802202 other downstream 1746268 5370410 ~ 5373762 (+) True G681268
TU802553 other downstream 2848893 6473035 ~ 6478999 (+) True G681592
TU802663 other downstream 3008766 6632908 ~ 6634989 (+) True G681686

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011534 False 2088 mRNA 0.42 9 NC_007124.7 12174937 ~ 12202658 (+)
bowfin (Amia calva) AMCG00017878 True 1207 mRNA 0.42 8 CM030131.1 26642382 ~ 26650068 (-)