RNA id: TCONS_00021824


Basic Information

Item Value
RNA id TCONS_00021824
length 700
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_010884
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36507489 ~ 36570467 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acaatgacttccatagtattttttcctgcCGATTTCTAGCATTATTCAGaatacatatttttgtttaacagaggtaataaatgtataaatgttcaataaataaatggtGACAAAAGTTTTCTCTTGCtaggaactatccctttaagtgtcgTGCGCACGGGACTTTTATTGTGAAGGCGCAGCGCTGCTGTGTTTCCGTGTTTAGTCAGCGTCGATCATCTGACGGCTTTAGTTCCTTTAAACGGAGTTTTGGAGTATTTTTTGGGAGTATTTAATCTGTTGAAGGGAGAGTTTAGGGTCCAGACATAAAGTCAACAGTGTTCTGCTGTTTAAAGCGTACAATTCTTCACATTATGGGGCAGTTTCTTGTGTTTTGGTCGACCTTCCTGCTGATGTGCGCGCGTTCAGTTTTTCTGAATcagaatcaacaacaacacaacaaccTACAACTGCTCCACCTGTGTGCAAACTGGAAGTAAAATATGACCTGAAAGAAAATATTGGAGCTGGCTGCTACGGCAATGTCTATCGTGGTATCAGAAAAGTGGACGGCAAACAGGTAAGTCTATTCACCCTAGTCCAGTTTAGAGGACATCAACTTTGGAGAAATCATGTTTGATTGCTCACTCATGTTTAATTCTACTTTTCATCCACAGTTTATCATCAAGTCGACTTTTTCAGAAGTTGACAGCAATGTGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021822 lncRNA downstream 22204 36491517 ~ 36491840 (-) True XLOC_010883
TCONS_00021821 lncRNA downstream 48399 36461637 ~ 36465645 (-) False XLOC_010882
TCONS_00021820 lncRNA downstream 48399 36461637 ~ 36465645 (-) True XLOC_010882
TCONS_00021819 lncRNA downstream 89943 36398505 ~ 36424101 (-) False XLOC_010881
TCONS_00022207 lncRNA upstream 8028 36578495 ~ 36579581 (-) False XLOC_010885
TCONS_00022208 lncRNA upstream 8028 36578495 ~ 36579658 (-) False XLOC_010885
TCONS_00022209 lncRNA upstream 8028 36578495 ~ 36610570 (-) False XLOC_010885
TCONS_00022210 lncRNA upstream 9976 36580443 ~ 36599740 (-) True XLOC_010886
TCONS_00022211 lncRNA upstream 35291 36605758 ~ 36610636 (-) False XLOC_010885
TCONS_00021300 mRNA downstream 317344 36167907 ~ 36196700 (-) True XLOC_010880
TCONS_00021298 mRNA downstream 395530 36095582 ~ 36118514 (-) False XLOC_010879
TCONS_00021299 mRNA downstream 414552 36095663 ~ 36099492 (-) True XLOC_010879
TCONS_00021297 mRNA downstream 420268 36072329 ~ 36093776 (-) True XLOC_010878
TCONS_00021295 mRNA downstream 449901 36038130 ~ 36064143 (-) False XLOC_010878
TCONS_00021303 mRNA upstream 150763 36721230 ~ 36748374 (-) False XLOC_010887
TCONS_00021305 mRNA upstream 151160 36721627 ~ 36746837 (-) False XLOC_010887
TCONS_00021304 mRNA upstream 151160 36721627 ~ 36746837 (-) True XLOC_010887
TCONS_00021306 mRNA upstream 195467 36765934 ~ 36798783 (-) False XLOC_010888
TCONS_00021308 mRNA upstream 237457 36807924 ~ 36834535 (-) False XLOC_010889
TCONS_00021294 other downstream 538887 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021291 other downstream 689336 35821991 ~ 35824708 (-) True XLOC_010875
TCONS_00021290 other downstream 689965 35821321 ~ 35824079 (-) False XLOC_010875
TCONS_00021289 other downstream 690098 35821321 ~ 35823946 (-) False XLOC_010875
TCONS_00021283 other downstream 1090044 35420564 ~ 35424000 (-) True XLOC_010872
TCONS_00021301 other upstream 37574 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other upstream 38227 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021311 other upstream 243756 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021319 other upstream 586538 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021337 other upstream 1992060 38562527 ~ 38562644 (-) True XLOC_010904

Expression Profile

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