RNA id: TCONS_00022240


Basic Information

Item Value
RNA id TCONS_00022240
length 1427
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_011027
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45982473 ~ 45994189 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatgggaGTCAAAATGCTGCAACTAAACATTCAGATAAAATCAGTGGGtaaaatttcataaaacaaacgaATTTGGCTTAAATAAAGTCAGAATACATGTCAAAGTGAGCTCTCAAAATCTTATTTGCATGCCTAAAAGGGTTATTTTTCTCAATTACGAGACATACAAGAACCAAATGTACTTTGTCAAGACGtcaaattcactttttttttttaatccactgtCTTAATACTCAAGATGAGGGCAAGCTTTTCTGTGCATAATCACTTCTATTCTCACTTTTATCTACCGCATAGTGGATTTAAATGTACCATATATATTTTATGGTCCGCATTTACCTTCATTATATAGAAACCAATGACCTATTTTCTCATTTTCTTATTAAACAAGTTTGAAACGACATGCAGGAGTGAGTAAacaacagcgtttttttttttttcatttctgccTGACTTGAACCTCTAGCTGGCTTTATTGTCTGTTAACAGtaaaaggattttaaaagcaCAAGTTTGTCATAAAATCTCGACGCGGAGTGCATCGTATAATAATTCAGATATTGAGAGATCTGCTAGCATCCCTCTACGTCCGTAAATGTCAACAACACCACTATAATCAGCACTATCAAtcaaaaaaaccaaacaaaatggaAATTCAGTTCAACAGTCCCCCGGGGGAGGACTGAACTAAGACTGAAAAGGCAACTAGGAAACAAGTGAGCTTGCGCACAACACAGTGGCATCTACAGCCGAACCCTGACCTCCGCAGTCCATTGAAGTGGAACTGCAAGCTCTGCCTCTAAAACGGAGCAAAGTGGCAGAATAGAAGCACAGCAACATAACAGTCCATTTCATTTCAAAAAAATCCACACGCGCAACCTCTGAACAATAGAAAAGTGCTTGATTAGGTGCAGCGACTGTTCTGGGGGAGAAAATGCATCTAGGGATATTACTATGTCCAGTGAACTTGAGGGATGCTGAGGTATTAACCCCAATATCATAAAGGAACACCACTGAAACTGGTGCAGCAGTAACATTTGAATCGGTTTTCAGCATCATCCCCCTTTGACCTGCGAGTACCTACTACTAATTTATTAACCAACATAACACTTCAGCATGATGTACCATTTCCCAAATAAAATTGACATCAGATTTGATCTTCCTAAACCGGGGACATGCACTTGGCTGAATTTAAAggttttgcacttttttttagaTGTTCTAGAAACACTTAATAGAACATAAACAACTGGGACTTTTAATAAGGACATGTGAAGACCTCAAGCGAAACCTTTGACTGTCAAGGTTTAGCTCCGTCAGTTGAACAAGCAATAAAAAGCACCATATTAGCTCATTTAAGCCAACCAGGTATGGCTTTCCAAAGGGTGCAAGTTAAAGTACTGTAGCGTTGGGCTAATGTGAATAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022239 lncRNA downstream 187346 45792385 ~ 45795127 (-) True XLOC_011023
TCONS_00021524 lncRNA downstream 659960 45316190 ~ 45322513 (-) True XLOC_011021
TCONS_00021519 lncRNA downstream 746526 45228103 ~ 45235947 (-) False XLOC_011018
TCONS_00021835 lncRNA downstream 751761 45228444 ~ 45230712 (-) False XLOC_011018
TCONS_00022238 lncRNA downstream 883767 45087971 ~ 45098706 (-) True XLOC_011009
TCONS_00022253 lncRNA upstream 105 45984458 ~ 45990842 (-) False XLOC_011027
TCONS_00022254 lncRNA upstream 315 45984668 ~ 45990842 (-) False XLOC_011027
TCONS_00022255 lncRNA upstream 441 45984794 ~ 45990842 (-) True XLOC_011027
TCONS_00022256 lncRNA upstream 103136 46087489 ~ 46093910 (-) False XLOC_011028
TCONS_00021531 lncRNA upstream 103136 46087489 ~ 46097432 (-) True XLOC_011028
TCONS_00021529 mRNA downstream 64790 45912647 ~ 45917683 (-) False XLOC_011026
TCONS_00021530 mRNA downstream 65151 45914480 ~ 45917322 (-) True XLOC_011026
TCONS_00021528 mRNA downstream 72423 45904153 ~ 45910050 (-) True XLOC_011025
TCONS_00021526 mRNA downstream 127591 45796602 ~ 45854882 (-) False XLOC_011024
TCONS_00021527 mRNA downstream 127591 45797026 ~ 45854882 (-) True XLOC_011024
TCONS_00021537 mRNA upstream 533761 46518114 ~ 46525135 (-) False XLOC_011034
TCONS_00021538 mRNA upstream 534317 46518670 ~ 46525155 (-) False XLOC_011034
TCONS_00021539 mRNA upstream 534407 46518760 ~ 46524842 (-) False XLOC_011034
TCONS_00021542 mRNA upstream 545891 46530244 ~ 46567136 (-) False XLOC_011035
TCONS_00021543 mRNA upstream 569627 46553980 ~ 46558521 (-) False XLOC_011036
TCONS_00021521 other downstream 736731 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 789321 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 807913 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021511 other downstream 838101 45140858 ~ 45144372 (-) True XLOC_011012
TCONS_00021510 other downstream 847994 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021532 other upstream 232455 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021533 other upstream 356190 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021580 other upstream 1958790 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 4011125 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 4654317 50638670 ~ 50638786 (-) True XLOC_011073