Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003032 |
| length | 3048 |
| lncRNA type | read_through |
| GC content | 0.42 |
| exon number | 2 |
| gene id | XLOC_000111 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 9129386 ~ 9132490 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0000152 | nuclear ubiquitin ligase complex | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003031 | lncRNA | upstream | 152964 | 8967479 ~ 8976422 (+) | True | XLOC_000106 |
| TCONS_00003029 | lncRNA | upstream | 163447 | 8950874 ~ 8965939 (+) | False | XLOC_000105 |
| TCONS_00000198 | lncRNA | upstream | 163447 | 8950874 ~ 8965939 (+) | False | XLOC_000105 |
| TCONS_00003030 | lncRNA | upstream | 163447 | 8961004 ~ 8965939 (+) | True | XLOC_000105 |
| TCONS_00000197 | lncRNA | upstream | 430275 | 8694291 ~ 8699111 (+) | True | XLOC_000104 |
| TCONS_00003033 | lncRNA | downstream | 21604 | 9154094 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000210 | lncRNA | downstream | 24886 | 9157376 ~ 9161475 (+) | True | XLOC_000113 |
| TCONS_00000214 | lncRNA | downstream | 145356 | 9277846 ~ 9285351 (+) | True | XLOC_000116 |
| TCONS_00000220 | lncRNA | downstream | 754465 | 9886955 ~ 9914630 (+) | False | XLOC_000120 |
| TCONS_00002811 | lncRNA | downstream | 814174 | 9946664 ~ 9951873 (+) | True | XLOC_000121 |
| TCONS_00000205 | mRNA | upstream | 37451 | 9086942 ~ 9091935 (+) | True | XLOC_000110 |
| TCONS_00000204 | mRNA | upstream | 37727 | 9082417 ~ 9091659 (+) | False | XLOC_000110 |
| TCONS_00000203 | mRNA | upstream | 54907 | 9071324 ~ 9074479 (+) | True | XLOC_000109 |
| TCONS_00000201 | mRNA | upstream | 64474 | 9004719 ~ 9064912 (+) | False | XLOC_000108 |
| TCONS_00000202 | mRNA | upstream | 85039 | 9004752 ~ 9044347 (+) | True | XLOC_000108 |
| TCONS_00000206 | mRNA | downstream | 12468 | 9144958 ~ 9145896 (+) | True | XLOC_000112 |
| TCONS_00000207 | mRNA | downstream | 20651 | 9153141 ~ 9161843 (+) | False | XLOC_000113 |
| TCONS_00000211 | mRNA | downstream | 66541 | 9199031 ~ 9227204 (+) | False | XLOC_000114 |
| TCONS_00000212 | mRNA | downstream | 66659 | 9199149 ~ 9206616 (+) | True | XLOC_000114 |
| TCONS_00000215 | mRNA | downstream | 157613 | 9290103 ~ 9294115 (+) | True | XLOC_000117 |
| TCONS_00000154 | other | upstream | 2065443 | 7063837 ~ 7063943 (+) | True | XLOC_000081 |
| TCONS_00000149 | other | upstream | 2341582 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
| TCONS_00000134 | other | upstream | 2943854 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000123 | other | upstream | 3627302 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000121 | other | upstream | 3678942 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000208 | other | downstream | 21604 | 9154094 ~ 9155273 (+) | False | XLOC_000113 |
| TCONS_00000209 | other | downstream | 22503 | 9154993 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000213 | other | downstream | 86158 | 9218648 ~ 9221616 (+) | True | XLOC_000115 |
| TCONS_00000230 | other | downstream | 919284 | 10051774 ~ 10054771 (+) | False | XLOC_000126 |
| TCONS_00000231 | other | downstream | 919294 | 10051784 ~ 10058057 (+) | False | XLOC_000126 |
